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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3991 A_BomoASG_c14881_g1_i1
794bp
FPKM:12.77 TPM:9.80
3992 A_BomoASG_c14881_g1_i2
274bp
FPKM:0.00 TPM:0.00
3993 A_BomoASG_c14882_g1_i1
231bp
 TRAS6,_partial_[Bombyx_mori]
FPKM:1.48 TPM:1.13
3994 A_BomoASG_c14883_g1_i1
449bp
 tafazzin_homolog_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0006644 P phospholipid metabolic process
GO:0007006 P mitochondrial membrane organization
GO:0007007 P inner mitochondrial membrane organization
GO:0007291 P sperm individualization
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016746 F acyltransferase activity
GO:0031224 C intrinsic component of membrane
GO:0031966 C mitochondrial membrane
GO:0032048 P cardiolipin metabolic process
GO:0032049 P cardiolipin biosynthetic process
GO:0032577 F phosphatidylcholine:cardiolipin O-linoleoyltransferase activity
GO:0035965 P cardiolipin acyl-chain remodeling
FPKM:4.60 TPM:3.53
3995 A_BomoASG_c14884_g1_i1
7422bp
 pre-mRNA-processing-splicing_factor_8_[Bombyx_mori]
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000386 F second spliceosomal transesterification activity
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0030620 F U2 snRNA binding
GO:0030623 F U5 snRNA binding
GO:0044822 F RNA binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:0071356 P cellular response to tumor necrosis factor
GO:0097157 F pre-mRNA intronic binding
FPKM:66.05 TPM:50.66
3996 A_BomoASG_c14885_g1_i1
930bp
 lethal(3)malignant_brain_tumor-like_protein_3_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0030099 P myeloid cell differentiation
GO:0030225 P macrophage differentiation
GO:0030851 P granulocyte differentiation
GO:0043249 P erythrocyte maturation
FPKM:2.59 TPM:1.98
3997 A_BomoASG_c14887_g1_i1
247bp
FPKM:4.34 TPM:3.33
3998 A_BomoASG_c14889_g1_i1
344bp
FPKM:1.86 TPM:1.43
3999 A_BomoASG_c14890_g1_i1
201bp
FPKM:1.12 TPM:0.86
4000 A_BomoASG_c14891_g1_i1
805bp
FPKM:3.72 TPM:2.85
4001 A_BomoASG_c14892_g1_i1
204bp
FPKM:1.06 TPM:0.82
4002 A_BomoASG_c14893_g1_i1
1821bp
 uncharacterized_protein_LOC101744019_isoform_X1_[Bombyx_mori]
FPKM:23.27 TPM:17.85
4003 A_BomoASG_c14894_g1_i1
827bp
 THAP_domain-containing_protein_9,_partial_[Camponotus_floridanus]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004803 F transposase activity
GO:0006310 P DNA recombination
GO:0006313 P transposition, DNA-mediated
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
FPKM:2.55 TPM:1.95
4004 A_BomoASG_c14895_g1_i1
476bp
FPKM:0.45 TPM:0.35
4005 A_BomoASG_c14895_g1_i2
414bp
FPKM:2.61 TPM:2.00
4006 A_BomoASG_c14896_g1_i1
2722bp
 thioredoxin_reductase_1,_mitochondrial_isoform_X7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001666 P response to hypoxia
GO:0004362 F glutathione-disulfide reductase (NADPH) activity
GO:0004791 F thioredoxin-disulfide reductase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0005875 C microtubule associated complex
GO:0006974 P cellular response to DNA damage stimulus
GO:0008340 P determination of adult lifespan
GO:0016209 F antioxidant activity
GO:0016491 F oxidoreductase activity
GO:0016668 F oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0042803 F protein homodimerization activity
GO:0045454 P cell redox homeostasis
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
GO:0098869 P cellular oxidant detoxification
FPKM:56.22 TPM:43.12
4007 A_BomoASG_c14896_g1_i2
2646bp
 thioredoxin_reductase_1,_mitochondrial_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001666 P response to hypoxia
GO:0004362 F glutathione-disulfide reductase (NADPH) activity
GO:0004791 F thioredoxin-disulfide reductase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0005875 C microtubule associated complex
GO:0006974 P cellular response to DNA damage stimulus
GO:0008340 P determination of adult lifespan
GO:0016209 F antioxidant activity
GO:0016491 F oxidoreductase activity
GO:0016668 F oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0042803 F protein homodimerization activity
GO:0045454 P cell redox homeostasis
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
GO:0098869 P cellular oxidant detoxification
FPKM:7.50 TPM:5.75
4008 A_BomoASG_c14897_g1_i1
293bp
FPKM:5.06 TPM:3.88
4009 A_BomoASG_c14899_g1_i1
228bp
 gamma-glutamyl_transpeptidase_isoform_X2_[Bombyx_mori]
GO:0003840 F obsolete gamma-glutamyltransferase activity
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006536 P glutamate metabolic process
GO:0006749 P glutathione metabolic process
GO:0006750 P glutathione biosynthetic process
GO:0006751 P glutathione catabolic process
GO:0008233 F peptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016787 F hydrolase activity
GO:0031638 P zymogen activation
GO:0036374 F glutathione hydrolase activity
FPKM:2.29 TPM:1.76
4010 A_BomoASG_c148_g1_i1
238bp
FPKM:3.41 TPM:2.61
4011 A_BomoASG_c14902_g1_i1
690bp
 TM2_domain-containing_protein_CG11103_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:36.99 TPM:28.37
4012 A_BomoASG_c14903_g1_i1
460bp
FPKM:10.60 TPM:8.13
4013 A_BomoASG_c14905_g1_i1
360bp
FPKM:4.29 TPM:3.29
4014 A_BomoASG_c14907_g1_i1
6800bp
 spectrin_beta_chain_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005516 F calmodulin binding
GO:0005543 F phospholipid binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0007009 P plasma membrane organization
GO:0007026 P negative regulation of microtubule depolymerization
GO:0007274 P neuromuscular synaptic transmission
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0008017 F microtubule binding
GO:0008091 C spectrin
GO:0008092 F cytoskeletal protein binding
GO:0016199 P axon midline choice point recognition
GO:0016327 C apicolateral plasma membrane
GO:0016328 C lateral plasma membrane
GO:0030424 C axon
GO:0030506 F ankyrin binding
GO:0030721 P spectrosome organization
GO:0031594 C neuromuscular junction
GO:0042062 P long-term strengthening of neuromuscular junction
GO:0045169 C fusome
GO:0045170 C spectrosome
GO:0045478 P fusome organization
GO:0048790 P maintenance of presynaptic active zone structure
GO:0050807 P regulation of synapse organization
GO:0051693 P actin filament capping
GO:0072499 P photoreceptor cell axon guidance
FPKM:63.45 TPM:48.67
4015 A_BomoASG_c14909_g1_i1
2034bp
 pescadillo_homolog_[Bombyx_mori]
GO:0000463 P maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 P maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030687 C preribosome, large subunit precursor
GO:0042254 P ribosome biogenesis
GO:0042273 P ribosomal large subunit biogenesis
GO:0043021 F ribonucleoprotein complex binding
FPKM:43.57 TPM:33.42
4016 A_BomoASG_c1490_g1_i1
455bp
FPKM:1.57 TPM:1.20
4017 A_BomoASG_c14911_g1_i1
1378bp
FPKM:16.89 TPM:12.95
4018 A_BomoASG_c14912_g1_i1
991bp
 1-Cys_peroxiredoxin_[Bombyx_mori]
GO:0000302 P response to reactive oxygen species
GO:0003824 F catalytic activity
GO:0004601 F peroxidase activity
GO:0004602 F glutathione peroxidase activity
GO:0004623 F phospholipase A2 activity
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005829 C cytosol
GO:0006629 P lipid metabolic process
GO:0006979 P response to oxidative stress
GO:0008152 P metabolic process
GO:0009395 P phospholipid catabolic process
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0016042 P lipid catabolic process
GO:0016209 F antioxidant activity
GO:0016491 F oxidoreductase activity
GO:0016787 F hydrolase activity
GO:0031410 C cytoplasmic vesicle
GO:0031625 F ubiquitin protein ligase binding
GO:0051920 F peroxiredoxin activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:0098869 P cellular oxidant detoxification
FPKM:32.23 TPM:24.72
4019 A_BomoASG_c14913_g1_i1
2158bp
 monocarboxylate_transporter_9_[Bombyx_mori]
GO:0005308 F creatine transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0015129 F lactate transmembrane transporter activity
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035879 P plasma membrane lactate transport
GO:0055085 P transmembrane transport
GO:1902598 P creatine transmembrane transport
FPKM:3.54 TPM:2.71
4020 A_BomoASG_c14914_g1_i1
563bp
 NADH_dehydrogenase_[ubiquinone]_1_alpha_subcomplex_subunit_6_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
FPKM:122.73 TPM:94.14
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