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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c14884_g1_i1
Scaffold_idBomo_Chr8
NCBI non-redundant
(nr)		pre-mRNA-processing-splicing_factor_8_[Bombyx_mori]
Ontology
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000386 F second spliceosomal transesterification activity
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0030620 F U2 snRNA binding
GO:0030623 F U5 snRNA binding
GO:0044822 F RNA binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:0071356 P cellular response to tumor necrosis factor
GO:0097157 F pre-mRNA intronic binding
Transcript
Level		FPKM:66.05 TPM:50.66
ORF EntryO_BomoASG3012_complete:A_BomoASG_c14884_g1_i1
Sequence
(Nucleotide)
CGTCAAACAAATTGATTTGTATTAGAGTTGTTTGTAATTTTTTCTTCCAAATGTGGTGTT
ATATTAACTTTGTTGAAAGTGATACAATACATTTCAAGCCTTAAACTCGAAAAGTAGGCG
GTCAGCAATGTCGCTGCCGCCGTATCTGCTGGGGCCCAACCCCTGGGCCACGATGATGGC
GCAGCAGCAGTTGGCAGCGGCACAACAAGCGGCGCTTCAAGCGCACGCGGCTGCCGCTGC
TGCTGCGCCCCCGGTGCCACCAGCGCAGCCCCCTAAACCAACTCATGTTCCCGAGGAGAA
GATAAAAGAAAAAGCTCAGAAATGGCTTCAACTGCAATCAAAACGTTTTGCGGAGAAGCG
AAAATTTGGGTTTGTGGATGCACAAAAAGAAGACATGCCTCCAGAACACATCAGAAAAAT
TATCAGAGATCATGGCGACATGACTAGTCGTAAATATCGCCATGATAAACGTGTATACCT
CGGAGCATTAAAGTATATGCCTCATGCTGTCATGAAGCTCCTGGAAAATATGCCCATGCC
TTGGGAGCAGATCAGAGATGTAAAGGTTTTGTACCATATCACAGGAGCTATAACATTCGT
TAATGAAATTCCGTGGGTGATTGAGCCAGTTTATATTGCACAATGGGGTACAATGTGGAT
CATGATGAGACGTGAAAAACGTGATCGTCGTCATTTCAAACGTATGAGGTTCCCACCTTT
TGATGATGAGGAACCCCCTCTTGACTATGCTGACAATGTCTTAGATGTGGAACCATTAGA
GCCTATACAGATTGAGTTGGATCCTGAGGAAGATGGAGCTGTAGCATCTTGGTTTTATGA
CCACAAACCCCTTATTGACACCAGACATGTGAATGGTTCAACATACCGTCGTTGGAACTT
AACTCTTCCCCAAATGGCAACATTGTACCGTCTGGCTAATCAACTACTAACCGACTTGGT
GGACGATAACTACTTCTATCTCTTTGATTCAAAAAGTTTTTTCACTGCCAAAGCTCTAAA
TATGGCAATCCCTGGAGGCCCTAAATTTGAGCCTCTGGTGAAAGATAATTCTGCAGGAGA
TGAAGATTGGAATGAGTTCAATGATATCAATAAGATTATAATACGTCAGCCGATTCGCAC
GGAATATAGAATCGCATTTCCATATTTGTACAACAATCTGCCGCACTTTGTACAGTTGTC
TTGGTATCACACACCAAATGTTGTGTACATCAAAACTGAAGATCCAGATCTACCAGCCTT
CTACTTTGATCCCCTCATTAACCCTATCTCTCATCGTCATTCAGTAAAGTCTCTTGAACC
GGTCCCAGAAGAGGAAGATTACATACTCCCCGATGAAGTGTCTCCATTCTTACAAGAAAC
TGCACTTTACACAGATAATACAGCTAATGGTATTGCTCTACTTTGGGCGCCCAGACCATT
CAGTATGAGATCGGGACGGACTCGTCGCGCAATTGATGTGCCATTGGTAAAGACCTGGTA
TAAAGAACATTGCCCACCAGGCCAGCCTGTAAAAGTTCGTGTTTCATACCAAAAACTACT
CAAATACTATGTTCTTAACTCTTTGAAACACAGACCCCCCAAACCACAAAAGAAAAGGTA
TCTATTCCGCTCATTCAAATCAACCAAATTCTTCCAAACTACAACACTAGATTGGGTTGA
AGCTGGTTTACAAGTTTGTCGTCAAGGTTACAATATGCTTAACCTTCTCATTCATCGTAA
GAATTTAAATTATCTTCATCTGGATTACAATTTCAATTTGAAACCTGTGAAAACTCTTAC
TACAAAAGAAAGAAAGAAATCTCGGTTCGGAAACGCCTTCCATCTGTGTCGTGAGATACT
TCGTCTGACGAAGCTTATAGTGGACTCTCATGTACAATATCGTCTTAACAACGTGGACTC
TTTCCAACTCGCCGACGGTCTTCAGTATATTTTTGCTCATGTTGGACAACTGACGGGCAT
GTACCGTTACAAGTACAAGCTGATGAGGCAGATCAGAATGTGTAAAGATTTGAAGCATTT
GATTTACTACAGATTTAATACCGGTCCAGTATCGAAAGGACCCGGTTGTGGGTTCTGGGC
GCCAGGCTGGCGAGTATGGTTGTTCTTCATGAGAGGAATCACACCATTACTGGAACGTTG
GCTCGGAAATTTACTATCGAGACAATTCGAAGGAAGGCATTCCAAAGGTGTGGCGAAGAC
TGTTACTAAACAGCGTGTGGAGTCACACTTCGATCTTGAATTGCGTGCATCTGTAATGCA
CGACATTGTTGACATGATGCCTGAAGGTATTAAACAGAATAAGGCCAGGACGATATTGCA
ACATTTGTCTGAAGCTTGGAGATGCTGGAAAGCGAACATCCCTTGGAAGGTACCTGGACT
TCCAACTCCAATAGAGAACATGATTCTTCGCTACGTAAAGATGAAGGCGGACTGGTGGAC
CAACACAGCTCATTACAACAGAGAGCGTATCCGCCGTGGTGCGACTGTCGATAAAACAGT
CTGCAAGAAAAACCTTGGCAGACTAACAAGGTTGTATTTGAAAGCTGAGCAAGAAAGACA
GCACAACTACCTTAAGGACGGTCCCTACATATCTCCAGAGGAAGCCGTAGCAATCTACAC
TACCACTGTACATTGGCTTGAATCACGACGTTTCGCCCCAATTCCGTTCCCCCCTCTCTC
TTACAAGCACGACACAAAGCTATTAATTTTGGCTCTTGAACGTCTCAAAGAAGCGTATAG
CGTCAAATCCAGATTGAATCAGAGTCAGAGAGAAGAGCTAGGGCTTATCGAACAGGCGTA
TGATAATCCTCATGAAGCATTATCTAGGATTAAACGTCATTTGCTCACTCAAAGAACTTT
TAGGGAGGTGGGAATTGAGTTTATGGATCTCTACTCCCATTTAGTTCCAGTATATGATGT
AGAACCATTGGAGAAGATAACAGATGCATATCTTGATCAGTACTTATGGTATGAAGCAGA
CAAAAGACGTCTATTGCCACCCTGGGTCAAACCAGCTGATACAGAACCATCACCTTTACT
TGTCTACAAGTGGTGTCAGGGTATTAACAACCTTCAAGACGTATGGGAAGTTGGTGAAGG
CGAGTGTAATGTCTTGCTCGAGTCACGTTTTGAGAAATTGTATGAGAAGATAGATTTGAC
GCTGCTTAACAGGTTGTTACGTCTCATTGTGGACCATAACATTGCTGATTACATGACTGC
TAAAAACAATGTAGTGATCAATTATAAGGATATGAATCACACAAACTCATACGGTATAAT
TAGAGGTCTTCAATTTGCTTCCTTCATCGTCCAGTATTATGGCTTAGTGCTAGACTTACT
GGTGCTCGGTCTACAGAGAGCCAGTGAGATGGCTGGCCCACCACAACTGCCTAATGACTT
CCTTTCATACCAAGATCGTCAGACAGAAACTGCTCATCCTATTCGATTGTATTGCAGATA
CATAGATAGGATTCATATATTTTTCAGATTCTCAGCAGAGGAAGCAAGAGATCTGATTCA
ACGCTACCTTACAGAGCATCCTGATCCCAACAATGAGAACATTGTTGGTTACAATAACAA
AAAGTGCTGGCCGAGGGATGCTCGTATGCGTCTAATGAAGCACGATGTTAATCTTGGGCG
TGCAGTATTCTGGGACATAAAGAATCGTCTACCGCGTTCAGTGACAACTATACAATGGGA
GAACAGCTTTGTATCTGTTTATTCTAAGGACAATCCCAATTTGTTATTCAATATGGCTGG
ATTTGAATGCAGAATCTTGCCAAAGTGCCGAAGTCAACATGAAGAGCTGTCGCATCGTGA
CGGAGTATGGAACCTTCAGAACGAAGTGACCAAAGAGCGCACAGCACAATGCTACCTACG
TGTTGATGACGAATCCCTGGCTCGTTTCCACAATCGTGTCAGACAAATCCTTATGGCTTC
CGGATCAACGACCTTTACCAAAATCGTCAATAAATGGAATACTGCTCTTATTGGTCTAAT
GACATACTTCCGCGAGGCCGTTGTTAACACACAAGAACTCCTCGACTTACTCGTGAAATG
CGAGAATAAGATTCAAACTCGTATCAAGATTGGCCTTAACTCGAAAATGCCTTCGAGATT
CCCTCCGGTCGTGTTTTACACACCCAAAGAACTTGGAGGTTTAGGAATGTTGTCTATGGG
ACATGTTTTGATCCCGCAGTCTGACCTACGTTGGTCAAAACAAACAGACGTCGGCATAAC
GCATTTCCGTTCTGGAATGTCACATGATGAAGATCAACTAATTCCGAACTTGTACCGCTA
CATACAACCTTGGGAAGCTGAGTTTGTAGACTCCCAGCGAGTCTGGGCTGAATACGCACT
TAAGAGACAGGAAGCTAATGCTCAGAATAGACGATTGACTCTAGAAGATTTGGAAGATTC
TTGGGACAGGGGTATCCCGAGGATCAACACACTTTTCCAAAAAGACAGGCATACACTCGC
TTACGATAAGGGATGGCGTATACGTACGGAATTCAAACAGTATCAGGTCCTAAAGCAGAA
TCCATTCTGGTGGACTCACCAGCGTCACGACGGCAAACTGTGGAACTTGAACAACTATCG
CACAGATATGATACAAGCATTGGGAGGAGTTGAGGGTATCCTCGAGCATACATTGTTCAA
GGGAACTTACTTCCCGACTTGGGAGGGTTTGTTCTGGGAAAAGGCGTCTGGTTTCGAAGA
GTCGATGAAGTACAAAAAGTTGACAAACGCCCAACGATCCGGGTTGAATCAGATCCCGAA
CCGTCGATTCACATTATGGTGGTCGCCTACAATCAACAGAGCGAACGTCTACGTCGGTTT
TCAAGTACAACTGGATCTTACTGGTATATTCATGCACGGTAAGATTCCGACATTGAAGAT
TTCACTCATCCAAATCTTCAGAGCTCACTTGTGGCAGAAAGTACACGAGTCGATTGTTAT
GGATCTTTGTCAGGTATTCGATCAAGAACTTGACGCCTTAGAAATTGAGACGGTACAGAA
AGAAACCATTCATCCTCGTAAATCTTATAAGATGAATTCATCATGCGCCGATATATTACT
GTTCTCAGCCTACAAGTGGAACGTGTCCCGACCATCCTTATTAGCCGATACAAAGGACAC
AATGGACAATACAACTACACAAAAGTACTGGCTTGATATACAGCTTCGTTGGGGTGATTA
CGATTCTCACGACATCGAAAGATATGCTCGTGCTAAATTCTTGGATTACACTACAGACAA
CATGTCTATATATCCTTCACCTACCGGTTTGCTGATCGCCATTGATTTGGCCTATAACTT
GCACAGTGCATACGGTAACTGGTTCCCCGGTTGCAAACCTCTTATTCAACAAGCGATGGC
CAAGATAATGAAAGCTAATCCTGCCTTGTATGTGCTTAGGGAACGTATACGTAAAGCACT
GCAATTGTATTCTTCAGAACCTACTGAACCTTACCTCTCCAGTCAGAACTATGGAGAATT
GTTCTCTAATCAAATCATTTGGTTCGTTGATGACACGAATGTGTATCGTGTAACAATTCA
CAAAACCTTTGAAGGAAACTTGACAACTAAACCCATCAATGGAGCCATTTTTATATTCAA
TCCCCGAACTGGACAGCTATTCCTTAAAATAATTCATACTAGTGTATGGGCAGGGCAGAA
ACGTCTTGGACAGCTTGCTAAATGGAAGACTGCAGAAGAAGTAGCTGCCTTAATTCGATC
ACTGCCAGTTGAAGAACAACCAAAACAAATTATTGTTACCAGAAAAGGAATGTTGGATCC
ACTTGAGGTCCATTTACTCGACTTTCCTAACATTGTAATCAAGGGTTCCGAACTGCAGCT
GCCATTCCAGGCTTGTTTGAAAGTGGAAAAGTTTGGTGACCTCATATTGAAGGCAACTGA
GCCTCAAATGGTCTTGTTCAACTTATATGATGACTGGCTAAAGACTATATCTTCATATAC
TGCCTTCAGTCGGCTTATCCTGATACTCCGTGCTTTGCACGTGAACACAGAACGCACAAA
GGTCCTCTTGAAACCTGATAAAACCACTTTCACGGAACCTCACCACATTTGGCCCACTTT
AACTGATGATGATTGGATCAAAGTTGAGGTTCAACTGAAGGACCTAATATTAGCTGATTA
TGGAAAGAAGAACAATGTAAATGTGGCGTCGCTCACACAATCGGAAATCCGTGACATCAT
TCTTGGTATGGAGATATCTGCACCCTCTGCACAGCGTCAACAAATTGCCGAGATCGAAAA
GCAGAGTAAAGAACAGAGTCAACTTACCGCGACCACAACGCGTACTGTAAACAAACATGG
AGATGAAATTATAACCTCAACGACGAGCAATTATGAGTCGCAGACGTTTAGCTCTAAGAC
TGAATGGCGTGTCCGTGCGATATCAGCCACCAATTTACATCTTCGTACAAATCATATTTA
CGTGAGTTCCGATGACATCAAGGAAAGCGGATACACCTACATTCTGCCGAAGAACCTACT
TAAGAAATTCGTTACCATTTCCGATTTAAGGGCACAGATTGCCTGTTATTTGTATGGTAC
ATCACCAAGTGATAATCCAATGGTACGTGAGGTGCACTGTGCGGTACTGCCTCCCCAGTG
GGGCACACATCAACAAGTACATCTGCCGAAACACCTGCCAAAACATCCCGCTCTAGCACA
CCTGCAACCTCTTGGATGGATGCACACACAACCTAATGAGTTGCCCCAGCTATCACCTCA
GGATATCACTACACATGCCAAAATCATGTCCGATAACTCATCATGGGATGGCGAGAAGAC
TATTATCATAACTTGCTCATTCACGCCCGGCTCATGTTCCCTAACTGCGTACAAACTTAC
ACCAAGCGGATACGAATGGGGCGTGAGGAATACTGATAGAGGAAATAATCCTAAAGGCTA
CTTGCCGAGTCATTACGAGAGAGTGCAGATGTTGCTCTCAGATAGATTCCTGGGCTATTT
CATGGTGCCGTCGCAGGGCAGTTGGAATTATAACTTTATGGGCGTCCGTCACGACCCGAA
TATGAAGTACGGTGTGCAACTCGGCAACCCTCGCGAATTCTACCACGAGGTTCACAGACC
GGCGCATTTCATGAACTTTGCTGCTATGGAAGATGCTGCAGCACCAACAATCGCCGCTGA
CAGAGAAGACTTGTTTGCATAAATTTAATCTAGAAGCATTTTTATTGCGTTTCACTTTAT
GTTATAATAGAAATAAAAAAGAAAATAAACAGCTATTTAGCTGTTTATATATTATGCTTT
CGATTATTTGTCCTCTTTCGTTTTATATGAGTGTGTAATAGAATAAGGATAATATGTGTA
TTAGCATTAAATAATAAATTTCGATAATTACTAAAAAAAAAA
(7422 bp)

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