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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2671 A_BomoASG_c13443_g2_i1
10759bp
 basement_membrane-specific_heparan_sulfate_proteoglycan_core_protein-like_isoform_X2_[Bombyx_mori]
GO:0001523 P retinoid metabolic process
GO:0001525 P angiogenesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005796 C Golgi lumen
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0006027 P glycosaminoglycan catabolic process
GO:0008022 F protein C-terminus binding
GO:0022617 P extracellular matrix disassembly
GO:0030198 P extracellular matrix organization
GO:0030203 P glycosaminoglycan metabolic process
GO:0031012 C extracellular matrix
GO:0042157 P lipoprotein metabolic process
GO:0043202 C lysosomal lumen
GO:0044267 P cellular protein metabolic process
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
FPKM:91.75 TPM:70.37
2672 A_BomoASG_c13444_g1_i1
373bp
 probable_serine/threonine-protein_kinase_tsuA_isoform_X2_[Bombyx_mori]
FPKM:6.19 TPM:4.74
2673 A_BomoASG_c13445_g1_i1
292bp
 Transposon_Ty3-G_Gag-Pol_polyprotein_[Papilio_machaon]
FPKM:1.70 TPM:1.30
2674 A_BomoASG_c13447_g1_i1
341bp
FPKM:1.57 TPM:1.21
2675 A_BomoASG_c13449_g1_i1
2337bp
 titin_[Bombyx_mori]
GO:0005516 F calmodulin binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0030016 C myofibril
GO:0031430 C M band
GO:0031674 C I band
GO:0043292 C contractile fiber
GO:0045907 P positive regulation of vasoconstriction
GO:0045908 P vasoconstriction
FPKM:47.87 TPM:36.72
2676 A_BomoASG_c13449_g1_i2
13160bp
 titin_[Bombyx_mori]
GO:0005516 F calmodulin binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0030016 C myofibril
GO:0031430 C M band
GO:0031674 C I band
GO:0043292 C contractile fiber
GO:0045907 P positive regulation of vasoconstriction
GO:0045908 P vasoconstriction
FPKM:48.16 TPM:36.94
2677 A_BomoASG_c13449_g1_i3
13034bp
 titin_[Bombyx_mori]
GO:0005516 F calmodulin binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0030016 C myofibril
GO:0031430 C M band
GO:0031674 C I band
GO:0043292 C contractile fiber
GO:0045907 P positive regulation of vasoconstriction
GO:0045908 P vasoconstriction
FPKM:167.34 TPM:128.35
2678 A_BomoASG_c13450_g1_i1
668bp
 peptidyl-prolyl_cis-trans_isomerase-like_3_[Bombyx_mori]
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0006457 P protein folding
GO:0016853 F isomerase activity
GO:0071013 C catalytic step 2 spliceosome
FPKM:34.68 TPM:26.60
2679 A_BomoASG_c13450_g1_i2
350bp
 peptidyl-prolyl_cis-trans_isomerase-like_3_[Bombyx_mori]
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0006457 P protein folding
GO:0008380 P RNA splicing
GO:0016853 F isomerase activity
GO:0071013 C catalytic step 2 spliceosome
FPKM:0.00 TPM:0.00
2680 A_BomoASG_c13451_g1_i1
412bp
FPKM:14.85 TPM:11.39
2681 A_BomoASG_c13452_g1_i1
213bp
FPKM:2.79 TPM:2.14
2682 A_BomoASG_c13452_g2_i1
204bp
FPKM:5.32 TPM:4.08
2683 A_BomoASG_c13453_g1_i1
232bp
FPKM:0.00 TPM:0.00
2684 A_BomoASG_c13453_g1_i2
246bp
FPKM:2.51 TPM:1.92
2685 A_BomoASG_c13454_g1_i1
201bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:2.23 TPM:1.71
2686 A_BomoASG_c13455_g1_i1
503bp
 UPF0545_protein_C22orf39_homolog_isoform_X1_[Bombyx_mori]
FPKM:2.04 TPM:1.56
2687 A_BomoASG_c13455_g1_i2
586bp
 UPF0545_protein_C22orf39_homolog_isoform_X1_[Bombyx_mori]
FPKM:2.47 TPM:1.89
2688 A_BomoASG_c13455_g1_i3
492bp
 uncharacterized_protein_LOC105842222_isoform_X2_[Bombyx_mori]
FPKM:1.37 TPM:1.05
2689 A_BomoASG_c13456_g1_i1
1829bp
 putative_signal_recognition_particle_54_kDa_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005786 C signal recognition particle, endoplasmic reticulum targeting
GO:0006614 P SRP-dependent cotranslational protein targeting to membrane
GO:0008144 F obsolete drug binding
GO:0008152 P metabolic process
GO:0008312 F 7S RNA binding
GO:0016607 C nuclear speck
GO:0019003 F GDP binding
GO:0030529 C ribonucleoprotein complex
GO:0030942 F endoplasmic reticulum signal peptide binding
GO:0042493 P response to xenobiotic stimulus
GO:0045047 P protein targeting to ER
GO:0048500 C signal recognition particle
FPKM:86.83 TPM:66.61
2690 A_BomoASG_c13459_g1_i1
284bp
FPKM:2.11 TPM:1.62
2691 A_BomoASG_c13459_g1_i2
296bp
FPKM:0.96 TPM:0.73
2692 A_BomoASG_c1345_g1_i1
407bp
FPKM:25.39 TPM:19.47
2693 A_BomoASG_c13460_g1_i1
317bp
FPKM:2.52 TPM:1.94
2694 A_BomoASG_c13461_g1_i1
570bp
FPKM:4.96 TPM:3.81
2695 A_BomoASG_c13462_g1_i1
220bp
FPKM:2.20 TPM:1.69
2696 A_BomoASG_c13462_g1_i2
432bp
FPKM:3.90 TPM:2.99
2697 A_BomoASG_c13463_g1_i1
203bp
FPKM:1.08 TPM:0.83
2698 A_BomoASG_c13464_g1_i1
584bp
 LOW_QUALITY_PROTEIN:_protein_sidekick_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042675 P compound eye cone cell differentiation
GO:0046533 P negative regulation of photoreceptor cell differentiation
GO:0050931 P pigment cell differentiation
GO:0098595 C perivitelline space
FPKM:3.29 TPM:2.53
2699 A_BomoASG_c13465_g1_i1
413bp
FPKM:1.14 TPM:0.87
2700 A_BomoASG_c13467_g1_i1
2442bp
 chaperonin_containing_t-complex_polypeptide_1_beta_subunit_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002199 C zona pellucida receptor complex
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005832 C chaperonin-containing T-complex
GO:0005874 C microtubule
GO:0006457 P protein folding
GO:0007339 P binding of sperm to zona pellucida
GO:0031625 F ubiquitin protein ligase binding
GO:0043209 C myelin sheath
GO:0044297 C cell body
GO:0051082 F unfolded protein binding
GO:0051131 P chaperone-mediated protein complex assembly
GO:0070062 C extracellular exosome
GO:1901998 P toxin transport
FPKM:60.68 TPM:46.54
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