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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2641 A_BomoASG_c13408_g1_i1
703bp
 target_of_rapamycin_isoform_1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0001030 F RNA polymerase III type 1 promoter sequence-specific DNA binding
GO:0001031 F RNA polymerase III type 2 promoter sequence-specific DNA binding
GO:0001032 F RNA polymerase III type 3 promoter sequence-specific DNA binding
GO:0001156 F TFIIIC-class transcription factor complex binding
GO:0001933 P negative regulation of protein phosphorylation
GO:0001934 P positive regulation of protein phosphorylation
GO:0001938 P positive regulation of endothelial cell proliferation
GO:0003007 P heart morphogenesis
GO:0003179 P heart valve morphogenesis
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005979 P regulation of glycogen biosynthetic process
GO:0006109 P regulation of carbohydrate metabolic process
GO:0006112 P energy reserve metabolic process
GO:0006207 P 'de novo' pyrimidine nucleobase biosynthetic process
GO:0006281 P DNA repair
GO:0006468 P protein phosphorylation
GO:0006950 P response to stress
GO:0007281 P germ cell development
GO:0007420 P brain development
GO:0007569 P cell aging
GO:0007616 P long-term memory
GO:0008144 F obsolete drug binding
GO:0008542 P visual learning
GO:0009791 P post-embryonic development
GO:0010507 P negative regulation of autophagy
GO:0010592 P positive regulation of lamellipodium assembly
GO:0010628 P positive regulation of gene expression
GO:0010831 P positive regulation of myotube differentiation
GO:0010942 P positive regulation of cell death
GO:0010976 P positive regulation of neuron projection development
GO:0012505 C endomembrane system
GO:0014042 P positive regulation of neuron maturation
GO:0014736 P negative regulation of muscle atrophy
GO:0016020 C membrane
GO:0016049 P cell growth
GO:0016242 P negative regulation of macroautophagy
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016605 C PML body
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0018105 P peptidyl-serine phosphorylation
GO:0018107 P peptidyl-threonine phosphorylation
GO:0019901 F protein kinase binding
GO:0019904 F protein domain specific binding
GO:0021510 P spinal cord development
GO:0030030 P cell projection organization
GO:0030425 C dendrite
GO:0030838 P positive regulation of actin filament polymerization
GO:0031397 P negative regulation of protein ubiquitination
GO:0031529 P ruffle organization
GO:0031641 P regulation of myelination
GO:0031669 P cellular response to nutrient levels
GO:0031929 P TOR signaling
GO:0031931 C TORC1 complex
GO:0031932 C TORC2 complex
GO:0031998 P regulation of fatty acid beta-oxidation
GO:0032095 P regulation of response to food
GO:0032868 P response to insulin
GO:0032956 P regulation of actin cytoskeleton organization
GO:0032991 C protein-containing complex
GO:0035176 P social behavior
GO:0035264 P multicellular organism growth
GO:0042060 P wound healing
GO:0042220 P response to cocaine
GO:0043022 F ribosome binding
GO:0043025 C neuronal cell body
GO:0043087 P regulation of GTPase activity
GO:0043200 P response to amino acid
GO:0043278 P response to morphine
GO:0043610 P regulation of carbohydrate utilization
GO:0045429 P positive regulation of nitric oxide biosynthetic process
GO:0045670 P regulation of osteoclast differentiation
GO:0045727 P positive regulation of translation
GO:0045792 P negative regulation of cell size
GO:0045859 P regulation of protein kinase activity
GO:0045945 P positive regulation of transcription by RNA polymerase III
GO:0046777 P protein autophosphorylation
GO:0046889 P positive regulation of lipid biosynthetic process
GO:0048255 P mRNA stabilization
GO:0048661 P positive regulation of smooth muscle cell proliferation
GO:0048714 P positive regulation of oligodendrocyte differentiation
GO:0048738 P cardiac muscle tissue development
GO:0050731 P positive regulation of peptidyl-tyrosine phosphorylation
GO:0050769 P positive regulation of neurogenesis
GO:0050882 P voluntary musculoskeletal movement
GO:0051219 F phosphoprotein binding
GO:0051496 P positive regulation of stress fiber assembly
GO:0051534 P negative regulation of calcineurin-NFAT signaling cascade
GO:0051896 P regulation of protein kinase B signaling
GO:0051897 P positive regulation of protein kinase B signaling
GO:0055006 P cardiac cell development
GO:0055013 P cardiac muscle cell development
GO:0060048 P cardiac muscle contraction
GO:0060135 P maternal process involved in female pregnancy
GO:0060252 P positive regulation of glial cell proliferation
GO:0060999 P positive regulation of dendritic spine development
GO:0061051 P positive regulation of cell growth involved in cardiac muscle cell development
GO:0071456 P cellular response to hypoxia
GO:0090335 P regulation of brown fat cell differentiation
GO:0090559 P regulation of membrane permeability
GO:1901216 P positive regulation of neuron death
GO:1901838 P positive regulation of transcription of nucleolar large rRNA by RNA polymerase I
GO:1904000 P positive regulation of eating behavior
GO:1904056 P positive regulation of cholangiocyte proliferation
GO:1904058 P positive regulation of sensory perception of pain
GO:1904193 P negative regulation of cholangiocyte apoptotic process
GO:1904197 P positive regulation of granulosa cell proliferation
GO:1904206 P positive regulation of skeletal muscle hypertrophy
GO:1904213 P negative regulation of iodide transmembrane transport
FPKM:2.47 TPM:1.90
2642 A_BomoASG_c13410_g1_i1
322bp
 Mutant_cadherin_[Operophtera_brumata]
FPKM:3.50 TPM:2.68
2643 A_BomoASG_c13412_g1_i1
445bp
 LOW_QUALITY_PROTEIN:_GPI_mannosyltransferase_3_[Bombyx_mori]
GO:0000030 F mannosyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006506 P GPI anchor biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0097502 P mannosylation
FPKM:3.85 TPM:2.95
2644 A_BomoASG_c13414_g1_i1
284bp
FPKM:0.90 TPM:0.69
2645 A_BomoASG_c13415_g1_i1
418bp
 LOW_QUALITY_PROTEIN:_protein_sidekick_[Bombyx_mori]
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042675 P compound eye cone cell differentiation
GO:0046533 P negative regulation of photoreceptor cell differentiation
GO:0050931 P pigment cell differentiation
GO:0098595 C perivitelline space
FPKM:2.90 TPM:2.23
2646 A_BomoASG_c1341_g1_i1
379bp
 F-box/LRR-repeat_protein_2_isoform_X2_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000151 C ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008283 P cell population proliferation
GO:0016567 P protein ubiquitination
GO:0019005 C SCF ubiquitin ligase complex
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0051301 P cell division
FPKM:1.05 TPM:0.80
2647 A_BomoASG_c1341_g1_i2
361bp
 F-box/LRR-repeat_protein_2_isoform_X2_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000151 C ubiquitin ligase complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008283 P cell population proliferation
GO:0016567 P protein ubiquitination
GO:0019005 C SCF ubiquitin ligase complex
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0051301 P cell division
FPKM:0.00 TPM:0.00
2648 A_BomoASG_c13420_g1_i1
458bp
FPKM:7.76 TPM:5.95
2649 A_BomoASG_c13421_g1_i1
299bp
FPKM:1.62 TPM:1.24
2650 A_BomoASG_c13422_g1_i1
365bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC105841478_[Bombyx_mori]
FPKM:3.07 TPM:2.35
2651 A_BomoASG_c13423_g1_i1
267bp
 antitrypsin_isoform_X1_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
FPKM:1.03 TPM:0.79
2652 A_BomoASG_c13424_g1_i1
296bp
FPKM:1.24 TPM:0.95
2653 A_BomoASG_c13425_g1_i1
678bp
FPKM:19.14 TPM:14.68
2654 A_BomoASG_c13426_g1_i1
1452bp
 transmembrane_protein_50A_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:31.89 TPM:24.46
2655 A_BomoASG_c13427_g1_i1
356bp
FPKM:7.29 TPM:5.59
2656 A_BomoASG_c13429_g1_i1
422bp
FPKM:2.42 TPM:1.86
2657 A_BomoASG_c13431_g1_i1
279bp
FPKM:3.27 TPM:2.51
2658 A_BomoASG_c13432_g1_i1
1853bp
 zinc_finger_CCCH_domain-containing_protein_15_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0046872 F metal ion binding
FPKM:30.03 TPM:23.03
2659 A_BomoASG_c13433_g1_i1
243bp
FPKM:1.29 TPM:0.99
2660 A_BomoASG_c13434_g1_i1
230bp
FPKM:6.72 TPM:5.15
2661 A_BomoASG_c13435_g1_i1
624bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.63 TPM:1.25
2662 A_BomoASG_c13436_g1_i1
399bp
 uncharacterized_protein_LOC101738890_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.68 TPM:1.29
2663 A_BomoASG_c13437_g1_i1
238bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Amyelois_transitella]
FPKM:4.77 TPM:3.66
2664 A_BomoASG_c13437_g2_i1
264bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]
FPKM:1.59 TPM:1.22
2665 A_BomoASG_c13438_g1_i1
391bp
 vacuolar_protein_sorting-associated_protein_13D_[Bombyx_mori]
GO:0005622 C intracellular anatomical structure
GO:0006623 P protein targeting to vacuole
GO:0019898 C extrinsic component of membrane
GO:0045053 P protein retention in Golgi apparatus
GO:0070062 C extracellular exosome
FPKM:10.44 TPM:8.01
2666 A_BomoASG_c13439_g1_i1
268bp
FPKM:11.25 TPM:8.63
2667 A_BomoASG_c1343_g1_i1
266bp
FPKM:2.08 TPM:1.60
2668 A_BomoASG_c13442_g1_i1
325bp
FPKM:1.38 TPM:1.06
2669 A_BomoASG_c13442_g2_i1
421bp
FPKM:1.77 TPM:1.35
2670 A_BomoASG_c13443_g1_i1
2368bp
 uncharacterized_protein_LOC101745012_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0005041 F low-density lipoprotein particle receptor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043235 C receptor complex
GO:0050750 F low-density lipoprotein particle receptor binding
FPKM:46.17 TPM:35.42
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