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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2701 A_BomoASG_c13468_g1_i1
406bp
 centromere-associated_protein_E_isoform_X1_[Bombyx_mori]
FPKM:2.10 TPM:1.61
2702 A_BomoASG_c1346_g1_i1
264bp
FPKM:0.53 TPM:0.41
2703 A_BomoASG_c13470_g1_i1
327bp
FPKM:2.72 TPM:2.09
2704 A_BomoASG_c13471_g1_i1
811bp
 dynactin_4_protein_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0003281 P ventricular septum development
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0019886 P antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0031965 C nuclear membrane
GO:0035904 P aorta development
GO:0060976 P coronary vasculature development
FPKM:22.91 TPM:17.57
2705 A_BomoASG_c13475_g1_i1
234bp
 TRAS6,_partial_[Bombyx_mori]
FPKM:4.28 TPM:3.28
2706 A_BomoASG_c13477_g1_i1
420bp
 ATP-dependent_DNA_helicase_PIF6_[Bombyx_mori]
FPKM:0.66 TPM:0.51
2707 A_BomoASG_c13478_g1_i1
347bp
FPKM:0.91 TPM:0.70
2708 A_BomoASG_c13479_g1_i1
4060bp
 A_disintegrin_and_metalloproteinase_with_thrombospondin_motifs_1_precursor_[Bombyx_mori]
GO:0004175 F endopeptidase activity
GO:0004222 F metalloendopeptidase activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005615 C extracellular space
GO:0006508 P proteolysis
GO:0008201 F heparin binding
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0010573 P vascular endothelial growth factor production
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
GO:0030199 P collagen fibril organization
GO:0030574 P collagen catabolic process
GO:0031012 C extracellular matrix
GO:0032964 P collagen biosynthetic process
GO:0043206 P supramolecular fiber organization
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
GO:1900748 P positive regulation of vascular endothelial growth factor signaling pathway
FPKM:76.10 TPM:58.37
2709 A_BomoASG_c13480_g1_i1
608bp
 E3_ubiquitin-protein_ligase_znrf2_isoform_X1_[Bombyx_mori]
FPKM:31.71 TPM:24.32
2710 A_BomoASG_c13482_g1_i1
396bp
FPKM:9.98 TPM:7.66
2711 A_BomoASG_c13483_g1_i1
310bp
 Yokozuna_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.88 TPM:1.44
2712 A_BomoASG_c13485_g1_i1
539bp
 dentin_sialophosphoprotein-like_[Bombyx_mori]
FPKM:2.14 TPM:1.65
2713 A_BomoASG_c13486_g1_i1
348bp
FPKM:4.42 TPM:3.39
2714 A_BomoASG_c13487_g1_i1
289bp
 protein_shuttle_craft_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007399 P nervous system development
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:3.91 TPM:3.00
2715 A_BomoASG_c13489_g1_i1
207bp
FPKM:4.06 TPM:3.12
2716 A_BomoASG_c13491_g1_i1
304bp
FPKM:2.35 TPM:1.80
2717 A_BomoASG_c13493_g1_i1
491bp
 PREDICTED:_A_disintegrin_and_metalloproteinase_with_thrombospondin_motifs_1_[Papilio_polytes]
GO:0004222 F metalloendopeptidase activity
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0006508 P proteolysis
GO:0007275 P multicellular organism development
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0030334 P regulation of cell migration
GO:0035262 P gonad morphogenesis
GO:0046872 F metal ion binding
FPKM:2.35 TPM:1.80
2718 A_BomoASG_c13493_g1_i2
439bp
 A_disintegrin_and_metalloproteinase_with_thrombospondin_motifs_16_[Papilio_machaon]
GO:0004222 F metalloendopeptidase activity
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:1.57 TPM:1.20
2719 A_BomoASG_c13495_g1_i1
218bp
 uncharacterized_protein_LOC101739482_isoform_X1_[Bombyx_mori]
FPKM:0.87 TPM:0.67
2720 A_BomoASG_c13496_g1_i1
228bp
 uncharacterized_protein_LOC100862793_precursor_[Bombyx_mori]
FPKM:1.53 TPM:1.17
2721 A_BomoASG_c134_g1_i1
474bp
 disks_large-associated_protein_5_isoform_X3_[Bombyx_mori]
FPKM:1.84 TPM:1.41
2722 A_BomoASG_c13500_g1_i1
317bp
FPKM:5.77 TPM:4.42
2723 A_BomoASG_c13501_g1_i1
480bp
FPKM:2.53 TPM:1.94
2724 A_BomoASG_c13503_g1_i1
432bp
FPKM:0.85 TPM:0.65
2725 A_BomoASG_c13504_g1_i1
1074bp
 hypothetical_protein_RR48_12623_[Papilio_machaon]
GO:0004872 F signaling receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005925 C focal adhesion
GO:0007155 P cell adhesion
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007160 P cell-matrix adhesion
GO:0007229 P integrin-mediated signaling pathway
GO:0007298 P border follicle cell migration
GO:0007411 P axon guidance
GO:0007414 P axonal defasciculation
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007431 P salivary gland development
GO:0007435 P salivary gland morphogenesis
GO:0007475 P apposition of dorsal and ventral imaginal disc-derived wing surfaces
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007494 P midgut development
GO:0007608 P sensory perception of smell
GO:0008305 C integrin complex
GO:0008360 P regulation of cell shape
GO:0009925 C basal plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016203 P muscle attachment
GO:0016324 C apical plasma membrane
GO:0016328 C lateral plasma membrane
GO:0016337 P cell-cell adhesion
GO:0016477 P cell migration
GO:0021551 P central nervous system morphogenesis
GO:0030239 P myofibril assembly
GO:0033627 P cell adhesion mediated by integrin
GO:0034446 P substrate adhesion-dependent cell spreading
GO:0035099 P hemocyte migration
GO:0035160 P maintenance of epithelial integrity, open tracheal system
GO:0042383 C sarcolemma
GO:0045185 P maintenance of protein location
GO:0045214 P sarcomere organization
GO:0046982 F protein heterodimerization activity
GO:0050839 F cell adhesion molecule binding
GO:0050840 F extracellular matrix binding
GO:0050896 P response to stimulus
GO:0051492 P regulation of stress fiber assembly
GO:1990430 F extracellular matrix protein binding
FPKM:32.21 TPM:24.71
2726 A_BomoASG_c13505_g1_i1
697bp
 uncharacterized_protein_LOC101746965_[Bombyx_mori]
FPKM:3.04 TPM:2.33
2727 A_BomoASG_c13506_g1_i1
528bp
 uncharacterized_protein_LOC101741429_[Bombyx_mori]
FPKM:2.84 TPM:2.18
2728 A_BomoASG_c13507_g1_i1
961bp
FPKM:3.73 TPM:2.86
2729 A_BomoASG_c13508_g1_i1
330bp
 valine--tRNA_ligase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002161 F aminoacyl-tRNA editing activity
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004832 F valine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006438 P valyl-tRNA aminoacylation
GO:0006450 P regulation of translational fidelity
GO:0016874 F ligase activity
FPKM:6.68 TPM:5.13
2730 A_BomoASG_c1350_g1_i1
294bp
FPKM:1.68 TPM:1.28
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