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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2281 A_BomoASG_c13028_g1_i1
574bp
FPKM:8.01 TPM:6.14
2282 A_BomoASG_c13029_g1_i1
236bp
FPKM:2.79 TPM:2.14
2283 A_BomoASG_c13030_g1_i1
748bp
 mediator_of_RNA_polymerase_II_transcription_subunit_13_[Bicyclus_anynana]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
FPKM:3.38 TPM:2.59
2284 A_BomoASG_c13031_g1_i1
273bp
FPKM:3.92 TPM:3.01
2285 A_BomoASG_c13032_g1_i1
406bp
FPKM:4.21 TPM:3.23
2286 A_BomoASG_c13032_g1_i2
418bp
FPKM:0.00 TPM:0.00
2287 A_BomoASG_c13033_g1_i1
387bp
FPKM:2.78 TPM:2.13
2288 A_BomoASG_c13034_g1_i1
442bp
FPKM:6.55 TPM:5.02
2289 A_BomoASG_c13036_g1_i1
411bp
FPKM:3.90 TPM:2.99
2290 A_BomoASG_c13037_g1_i1
321bp
FPKM:3.52 TPM:2.70
2291 A_BomoASG_c13038_g1_i1
257bp
FPKM:5.63 TPM:4.32
2292 A_BomoASG_c13039_g1_i1
444bp
FPKM:11.38 TPM:8.73
2293 A_BomoASG_c13041_g1_i1
1876bp
 probable_phospholipid-transporting_ATPase_IIB_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004012 F ATPase-coupled intramembrane lipid transporter activity
GO:0005524 F ATP binding
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005886 C plasma membrane
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006897 P endocytosis
GO:0008152 P metabolic process
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0045332 P phospholipid translocation
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
GO:0072600 P protein localization to Golgi apparatus
FPKM:19.17 TPM:14.70
2294 A_BomoASG_c13042_g1_i1
817bp
 uncharacterized_protein_LOC105841620_[Bombyx_mori]
FPKM:2.67 TPM:2.05
2295 A_BomoASG_c13043_g1_i1
386bp
 nesprin-1_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
FPKM:0.00 TPM:0.00
2296 A_BomoASG_c13043_g1_i2
1260bp
 nesprin-1_isoform_X1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
FPKM:3.42 TPM:2.62
2297 A_BomoASG_c13045_g1_i1
406bp
FPKM:3.51 TPM:2.69
2298 A_BomoASG_c13046_g1_i1
1113bp
 serine/threonine_protein_phosphatase_6_[Bombyx_mori]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000278 P mitotic cell cycle
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005737 C cytoplasm
GO:0006470 P protein dephosphorylation
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:7.44 TPM:5.71
2299 A_BomoASG_c13046_g1_i2
1028bp
 serine/threonine_protein_phosphatase_6_[Bombyx_mori]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000278 P mitotic cell cycle
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005737 C cytoplasm
GO:0006470 P protein dephosphorylation
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:11.35 TPM:8.71
2300 A_BomoASG_c13047_g1_i1
1442bp
 probable_very-long-chain_enoyl-CoA_reductase_art-1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0055114 P obsolete oxidation-reduction process
FPKM:134.20 TPM:102.93
2301 A_BomoASG_c13050_g1_i1
265bp
FPKM:7.34 TPM:5.63
2302 A_BomoASG_c13051_g1_i1
267bp
 peptidyl-prolyl_cis-trans_isomerase_G-like_[Bombyx_mori]
FPKM:2.37 TPM:1.82
2303 A_BomoASG_c13051_g1_i2
292bp
 peptidyl-prolyl_cis-trans_isomerase_G-like_[Bombyx_mori]
FPKM:26.08 TPM:20.00
2304 A_BomoASG_c13053_g1_i1
1560bp
 probable_ATP-dependent_RNA_helicase_DDX47_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006397 P mRNA processing
GO:0006915 P apoptotic process
GO:0008380 P RNA splicing
GO:0008625 P extrinsic apoptotic signaling pathway via death domain receptors
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
FPKM:30.67 TPM:23.53
2305 A_BomoASG_c13054_g1_i1
233bp
 cytoplasmic_dynein_2_heavy_chain_1_[Bombyx_mori]
FPKM:5.77 TPM:4.42
2306 A_BomoASG_c13055_g1_i1
332bp
FPKM:4.96 TPM:3.80
2307 A_BomoASG_c13056_g1_i1
548bp
 uncharacterized_protein_KIAA0930_homolog_[Bombyx_mori]
FPKM:2.10 TPM:1.61
2308 A_BomoASG_c13057_g1_i1
248bp
 LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC105842701_[Bombyx_mori]
FPKM:1.84 TPM:1.41
2309 A_BomoASG_c13058_g1_i1
1940bp
 thymosin_isoform_1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0003785 F actin monomer binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007015 P actin filament organization
FPKM:749.49 TPM:574.89
2310 A_BomoASG_c13059_g1_i1
325bp
 uncharacterized_protein_LOC101739895_[Bombyx_mori]
FPKM:6.53 TPM:5.01
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