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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2161 A_BomoASG_c12909_g1_i1
465bp
FPKM:8.15 TPM:6.25
2162 A_BomoASG_c1290_g1_i1
447bp
FPKM:4.63 TPM:3.55
2163 A_BomoASG_c12910_g1_i1
395bp
FPKM:1.47 TPM:1.13
2164 A_BomoASG_c12911_g1_i1
493bp
 helicase_POLQ-like_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0003676 F nucleic acid binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006259 P DNA metabolic process
GO:0016787 F hydrolase activity
GO:0017116 F single-stranded DNA helicase activity
GO:0017117 C single-stranded DNA-dependent ATP-dependent DNA helicase complex
GO:0032508 P DNA duplex unwinding
FPKM:5.05 TPM:3.87
2165 A_BomoASG_c12911_g1_i2
244bp
FPKM:3.82 TPM:2.93
2166 A_BomoASG_c12912_g1_i1
287bp
 60S_ribosomal_protein_L38_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:153.46 TPM:117.71
2167 A_BomoASG_c12913_g1_i1
794bp
 uncharacterized_protein_LOC101743665_[Bombyx_mori]
FPKM:24.80 TPM:19.03
2168 A_BomoASG_c12916_g1_i1
276bp
FPKM:1.44 TPM:1.10
2169 A_BomoASG_c12917_g1_i1
1487bp
 tryptophan--tRNA_ligase,_cytoplasmic_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001525 P angiogenesis
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004830 F tryptophan-tRNA ligase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006436 P tryptophanyl-tRNA aminoacylation
GO:0008285 P negative regulation of cell population proliferation
GO:0016874 F ligase activity
GO:0045765 P regulation of angiogenesis
GO:0070062 C extracellular exosome
FPKM:36.50 TPM:28.00
2170 A_BomoASG_c12919_g1_i1
370bp
FPKM:3.54 TPM:2.72
2171 A_BomoASG_c1291_g1_i1
209bp
FPKM:2.96 TPM:2.27
2172 A_BomoASG_c12920_g1_i1
4302bp
 CCR4-NOT_transcription_complex_subunit_1_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0048589 P developmental growth
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
FPKM:32.75 TPM:25.12
2173 A_BomoASG_c12921_g1_i1
796bp
 transmembrane_protein_256_homolog_isoform_X1_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:28.27 TPM:21.69
2174 A_BomoASG_c12921_g1_i2
722bp
 transmembrane_protein_256_homolog_isoform_X1_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:6.40 TPM:4.91
2175 A_BomoASG_c12922_g1_i1
343bp
 G-protein-signaling_modulator_2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0001965 F G-protein alpha-subunit binding
GO:0005092 F GDP-dissociation inhibitor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008277 P regulation of G protein-coupled receptor signaling pathway
GO:0016020 C membrane
GO:0030154 P cell differentiation
GO:0030695 F GTPase regulator activity
GO:0050790 P regulation of catalytic activity
FPKM:3.11 TPM:2.39
2176 A_BomoASG_c12925_g1_i1
443bp
FPKM:2.45 TPM:1.88
2177 A_BomoASG_c12926_g1_i1
297bp
FPKM:27.48 TPM:21.08
2178 A_BomoASG_c12927_g1_i1
649bp
FPKM:2.62 TPM:2.01
2179 A_BomoASG_c12928_g1_i1
324bp
FPKM:3.46 TPM:2.65
2180 A_BomoASG_c1292_g1_i1
212bp
 hypothetical_protein,_partial_[Staphylococcus_aureus]
FPKM:0.94 TPM:0.72
2181 A_BomoASG_c12930_g1_i1
1513bp
 sialic_acid_synthase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008781 F N-acylneuraminate cytidylyltransferase activity
GO:0009103 P lipopolysaccharide biosynthetic process
GO:0016051 P carbohydrate biosynthetic process
GO:0016740 F transferase activity
GO:0047444 F N-acylneuraminate-9-phosphate synthase activity
GO:0050462 F N-acetylneuraminate synthase activity
GO:0070062 C extracellular exosome
FPKM:43.93 TPM:33.69
2182 A_BomoASG_c12930_g1_i2
991bp
 sialic_acid_synthase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008781 F N-acylneuraminate cytidylyltransferase activity
GO:0009103 P lipopolysaccharide biosynthetic process
GO:0016051 P carbohydrate biosynthetic process
GO:0016740 F transferase activity
GO:0047444 F N-acylneuraminate-9-phosphate synthase activity
GO:0050462 F N-acetylneuraminate synthase activity
GO:0070062 C extracellular exosome
FPKM:0.00 TPM:0.00
2183 A_BomoASG_c12931_g1_i1
346bp
FPKM:4.29 TPM:3.29
2184 A_BomoASG_c12932_g1_i1
603bp
FPKM:204.70 TPM:157.02
2185 A_BomoASG_c12933_g1_i1
1587bp
 antitrypsin_isoform_3_precursor_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
FPKM:123.86 TPM:95.01
2186 A_BomoASG_c12935_g1_i1
639bp
FPKM:33.82 TPM:25.94
2187 A_BomoASG_c12936_g1_i1
425bp
FPKM:15.44 TPM:11.84
2188 A_BomoASG_c12937_g1_i1
468bp
FPKM:7.71 TPM:5.91
2189 A_BomoASG_c12937_g1_i2
211bp
FPKM:6.63 TPM:5.09
2190 A_BomoASG_c12939_g1_i1
365bp
FPKM:13.12 TPM:10.06
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