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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoASG_c12920_g1_i1
Scaffold_idBomo_Chr1
NCBI non-redundant
(nr)		CCR4-NOT_transcription_complex_subunit_1_isoform_X2_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0048589 P developmental growth
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Transcript
Level		FPKM:32.75 TPM:25.12
ORF EntryO_BomoASG2231_5prime_partial:A_BomoASG_c12920_g1_i1
Sequence
(Nucleotide)
CCAGAACCCATACAAGATAAAACTGCTTTCATTTTTAACAATCTTAGTCAACTTAATTTG
CAAACCAAATGTGAAGAACTTAAGGAAGTACTTACCGATGAATACTATCCCTGGCTTTCT
CAGTACCTTGTTATGAAGAGAGCCTCTATTGAACTCAATTTCCATGCTTTGTATTCTAAT
TTCCTTGATGTTCTTAAAGTCCGCGAAGTAAATAAATTAGTCACAAAGGAAACTTATCGC
AATATCCGTGTGTTATTGCGTTCAGATAAAGGAATCGCTAATTTCTCGGATCGATCGCTT
CTCAAGAATCTTGGTCACTGGCTCGGCATGCTAACACTTGCAAGAAACCAGCCGATTCTC
CTCCTCGACTTGGATTTAAAGGCGTTGGTCCTCGAAGCCTATCATAAAGGCCAGCAAGAA
CTGCTTTATGTGGTTCCTTTCGTTGCGAAAGTTTTAGAATCTTGCGCGAAAAGTGTAGTA
TTTAAACCTCCGAACCCGTGGACGATGGCCCTTATGAACGTTCTAGCAGAACTACATCAA
GAACCCGACTTGAAATTGAACCTAAAATTTGAAATCGAAGTATTGTGTAAAAACTTAGGC
CTGGACATAATGGATTTGAAGCCTTCCCTTTACTTGAAAGACCCTGAAAAATTGAGGCAG
ATTGAGTTCCAACTATCACAGCCGAAGCCAAACAAAGAAGCCGCAAATACAATGCCGGTC
AACCCGCCAATTCAAGTACCACCGCCGCAGATACCAATAATGCCGCCTCAGCCTCCGATG
ATTCCTGCTGAAGAAATGGCAGGACCTGTCCCTCCTCCACCAACTGGCTTAGTGCCCGCC
GATCCTGGTCTGATGGGCGTGCTCGGTATGCCAGAACCCAGGTTCAACTATTTGGATGTG
AACGTATCCTCCACGTCTGCGTTCGGACAAAAGATTTGTTTCAACCCTCACATAATCTTA
TTCCAAAACTACCCGCATCTTAAACAGTTTGTAAAGCCCGCGATCGAGAGATCGATCCAA
GAATGGATTCACCCAGTCGTTGATAGGTCTATCAAGTATGCTTTGACAACTTGTGAACAG
ATCATACGGAAGGATTTCGCATTGGACCCTGACGAAGTTCGAATGCGTACCTGCGCTCAT
CACATGATGCGCAACTTGACTGCCGGCATGGCAATGATCACATGCCGAGAGCAGATCATC
ACCACCATCAGCACTAATCTGAAGGCAGCTTTCATCACTGCTCTCATGCCATCAACACAA
CAACAAAAAGAAATCATCGAGAGTGCAGCTGCTGTCCTTGCTACTGAAAACATGGAACTG
GCCTGCGCTTTCATTCAGAAGACAGCCGTTGAGAAGGCTCTACCTGAATTAGACAAACGC
TTGATTAGCGATTACGAAATGCGAAAACTGGCCCGTCAAGAAGGCCGCCGCTATTATGAC
ACCATCGTCGTGACTTACCAGACTGAAAGGATCCCGGAAAGAGTCCGCCTGCGCGTCGGA
GGTCCGACAGACATGCAGATATCAGTATACGAAGAGTTCGCATGCAACATTCCGGGATTT
GTCCCCGTCAGAGATGCGGGCATGTTCATCCCGAAGCCGTCTCAAGAGCAGATTCCACAG
CTGTTCATGAATCCAGCTCAAGTGTACGGCGCTGACGAGATGGGCGCTCTGATAAACACT
GCGGAACTATTCCTTGCCAATTCCTTAGGTGTGGCTTCCTTGGCTGTCCAGGCAGCGAAC
ATGCATACGCTGCTCGAGTGCTTGTTTATGGCGAGACGGAGTCGCGATATTGTGTCTGGC
TGTACTCTACTGCAGAAGGCTGTAGATGGTTTGCTTGATGGACATTTAGTCCCACCCGGT
GCGAGCAACGAACACATCGAAATGATGGCCCGCTACCGCGACATCCACCTTCGTGTCCTG
AAACTACTCGAAGACGCCAGAGTCTATGGACACGTTTGGACTTCCAAGCAGATCACCTGC
TGCTTGATTGAATGCAGGGAGGAACTCCGATACAATATCGAGGCTGTTGACTGCCTTATC
AGAAACCATTTGGTTAATCTACCACAGTATGATATCGCCCTTGCTCATATGATGGACAAT
GGCAATAACTACGTGGCGGTAGCATTCGCTATGCAACTAGTACAGCTGTATCTTGTCGAT
GACAGAAATAACATGTACGTTAACGAATCTGACTTGTACCACACGACCGAAATGTTAGTG
AGGGTCATGTCCCACTCAAGGACGCCTCCGCCCGAGGGTCTGGGCTCCCTGATCGAGATT
TTGAGGGTGAATCAGGACCCTAGTGCATATTTGGGCGAAAGGTCACCGCTCGGACCGACG
GCCCACATACATTCTGGAATACTGCAAGTTCGAGCACAAAACTATGACGACCCACCCGGA
CTTCAAGAGAAGACTGAGAATTTACTCCGTGAATGGAGGAATGTTCTCCTCAGTCCTCTG
ACAGAGATCGAACTGGCGCAGAACTTCAACTTGTATGTCCACCGAATGAACATGAACGGC
ATTCTCAAATCTGATGACATGATCGCTAGATTCTTCAGAATGGCCTCGCAGATGTGCATC
GAGAATGTATACCAACTTCTGAACGAGGACAGGGTTAATCCACCTCCAGTGCCTCAGAAA
CGTGAGAAATTCTACACCATGTGCGACTCTTTTATCAAACTTGTCTCGCTTTTGATCAAG
AATACAGCCGATAGCGGAAATCCCACTCCGAAATTAAACCTTCTGAACAAGATTCTAGGC
ATTATAGTTGGCTGGCTACTCCAGGACCACGATGACCAGGGCACCAACTTCCAGCAGCTA
CCGTACCACCGCCTACTCCTGATTCTGTTCCTCGACATGAACATGGCTGAGCCTGTTCTA
GAATCTATGAACTATCAGGTTCTGACTGCGTTCTGCCACACCCTTCGCATTATCAAACCA
AGTGTCGCTCCCGGATTCTGTTACGCGTGGCTCGAGATTGTGGCCCACCGTGCCTTCATA
AACCGCGTCCTAGCTGTTACTCCACAACAAAAGGGCTGGGGAATGTACTCGACCTTACTC
ATTGAGCTGTTCAAATTCCTTGATCCATTCCTGCGTAACACTGAGCTTGCTCCTCCGGTC
ATGACGCTATACAAAGGAACCCTCAAGGTGTTGTTGGTCTTACTCCATGATTTCCCGGAG
TTCCTGTGCGATTACCACTATGGTTTCTGTGACGAAATCCCCCCGAACTGCATTCAAATG
CGCAATTTAATACTGTCCGCTTTCCCGCGGAACATGAGGCTTCCCGATCCGTTCACGCCG
AATCTGAAAGTTGACTTGCTCCCGGAAATTGCTCTACCGCCTCGTGCGGTCATCAACTAT
TCTACGATCATCTCTGCGTCACAGTTCAAGAAGGATTTGGACGCGTACCTCAAAGCGAGA
GCTCCAGTTACCTTCCTGTCTGAATTAAGGGGAAATATGCAGGTTGCGAACGAGCCTGGC
AAGCGATACAACAGTCAGCTGATGAACGCGGTTGTCTTGTACGTCGGCACACAGGCCATT
GCCTATATTCGTGCTAAAGGGCAAACTCCGAATATGTCGACGATTGCACATTCAGCTCAC
ATGGATATCTTCCAGAACTTTACCGTGGATTTCGATTTTGAAGGCCGGTACCTGTTCTTG
AACGCGATAGCCAATCAGCTGCGTTACCCGAACAGTCACACGCACTACTTCTCTTGCTGT
CTCCTCTACTTGTTCGCGGAGGCCAATTCGGAAGCAGTACAAGAACAGATCACCAGGATG
CTCCTGGAACGGCTGATCGTCAACCGTCCGCACCCTTGGGGTCTGCTCATCACTTTCATC
GAACTAATCAAGAATCCCATCTACAAATTCTGGTCCCACGAATTTGTACACTGCGCTCCG
GAGATAGAGAAGCTGTTCGCTTCGGTGGCGCGATCGTGCATCGCCGACACAACGGGTGGG
GGAGGGGGGGAGAGGGAAGCGGCCGAGTAGCGCCGCGCCAATTGGGAGTCTCTCCGGCAT
AAGCAAGGGTACAAAAGCTATGCTGAGAAAGGCTTCCAATCTGAGGCTAGCACGAGCCAG
GCGCCTCAGCCGCAGCCGTCCACCTCTACCCAACCCCCCAAAGGCCCAATGCAGTGGAAC
AAGCTGTTCAAGAAGTAAATGACTTTTGAAACAAGTGAACGTTTTCTCTAAAGACACTGT
GATAGTGAAATGTGTAGTGTAAGTGTTTATATCTTAATCCTTAAACAACGGTCACAAATG
GTTTATATATAATATATATATAAATAAATTAATTGATGCATG
(4302 bp)

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