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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2131 A_BomoASG_c12874_g1_i4
613bp
 hnRNPA/B-like_28_isoform_X4_[Bombyx_mori]
FPKM:4.54 TPM:3.48
2132 A_BomoASG_c12875_g1_i1
463bp
FPKM:3.05 TPM:2.34
2133 A_BomoASG_c12876_g1_i1
717bp
 hypothetical_protein,_partial_[Bombyx_mori]
FPKM:2.31 TPM:1.77
2134 A_BomoASG_c12877_g1_i1
470bp
 neuropathy_target_esterase_sws_isoform_X6_[Bombyx_mori]
FPKM:2.61 TPM:2.00
2135 A_BomoASG_c12878_g1_i1
523bp
 ubiquitin_carboxyl-terminal_hydrolase_34_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016055 P Wnt signaling pathway
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0071108 P protein K48-linked deubiquitination
GO:0090263 P positive regulation of canonical Wnt signaling pathway
FPKM:0.75 TPM:0.58
2136 A_BomoASG_c12878_g1_i2
543bp
 ubiquitin_carboxyl-terminal_hydrolase_34_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016055 P Wnt signaling pathway
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0071108 P protein K48-linked deubiquitination
GO:0090263 P positive regulation of canonical Wnt signaling pathway
FPKM:4.90 TPM:3.76
2137 A_BomoASG_c12880_g1_i1
426bp
FPKM:3.25 TPM:2.49
2138 A_BomoASG_c12884_g1_i1
442bp
FPKM:65.90 TPM:50.55
2139 A_BomoASG_c12885_g1_i1
849bp
FPKM:2.80 TPM:2.15
2140 A_BomoASG_c12886_g1_i1
209bp
FPKM:3.94 TPM:3.02
2141 A_BomoASG_c12887_g1_i1
333bp
FPKM:2.96 TPM:2.27
2142 A_BomoASG_c12888_g1_i1
2024bp
 LOW_QUALITY_PROTEIN:_T-cell_immunomodulatory_protein_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0070062 C extracellular exosome
FPKM:27.25 TPM:20.90
2143 A_BomoASG_c12889_g1_i1
231bp
FPKM:0.74 TPM:0.57
2144 A_BomoASG_c1288_g1_i1
223bp
FPKM:1.63 TPM:1.25
2145 A_BomoASG_c12892_g1_i1
649bp
 mental_retardation_GTPase_activating_protein_homolog_4_isoform_X3_[Bombyx_mori]
GO:0004601 F peroxidase activity
GO:0005344 F oxygen carrier activity
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006979 P response to oxidative stress
GO:0015671 P oxygen transport
GO:0016020 C membrane
GO:0098869 P cellular oxidant detoxification
FPKM:15.38 TPM:11.79
2146 A_BomoASG_c12892_g1_i2
737bp
 mental_retardation_GTPase_activating_protein_homolog_4_isoform_X3_[Bombyx_mori]
GO:0004601 F peroxidase activity
GO:0005344 F oxygen carrier activity
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006979 P response to oxidative stress
GO:0015671 P oxygen transport
GO:0016020 C membrane
GO:0098869 P cellular oxidant detoxification
FPKM:5.77 TPM:4.42
2147 A_BomoASG_c12893_g1_i1
544bp
 verprolin_[Bombyx_mori]
FPKM:0.00 TPM:0.00
2148 A_BomoASG_c12893_g1_i2
696bp
 verprolin_[Bombyx_mori]
FPKM:3.27 TPM:2.51
2149 A_BomoASG_c12894_g1_i1
654bp
 39S_ribosomal_protein_L27,_mitochondrial_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
FPKM:27.26 TPM:20.91
2150 A_BomoASG_c12895_g1_i1
350bp
FPKM:1.80 TPM:1.38
2151 A_BomoASG_c12895_g2_i1
390bp
FPKM:1.75 TPM:1.34
2152 A_BomoASG_c12896_g1_i1
3204bp
 transmembrane_protein_184B_isoform_X2_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:102.86 TPM:78.90
2153 A_BomoASG_c12897_g1_i1
264bp
FPKM:4.76 TPM:3.65
2154 A_BomoASG_c12900_g1_i1
2181bp
 protein_DEK_isoform_X3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007165 P signal transduction
GO:0016568 P chromatin organization
GO:0019079 P viral genome replication
GO:0042393 F histone binding
GO:0043292 C contractile fiber
GO:0044822 F RNA binding
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:2000779 P regulation of double-strand break repair
GO:2001032 P regulation of double-strand break repair via nonhomologous end joining
FPKM:140.84 TPM:108.03
2155 A_BomoASG_c12900_g1_i2
2097bp
 protein_DEK_isoform_X3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0008150 P biological_process
GO:0016568 P chromatin organization
GO:0042393 F histone binding
GO:0043292 C contractile fiber
GO:0044822 F RNA binding
GO:2000779 P regulation of double-strand break repair
GO:2001032 P regulation of double-strand break repair via nonhomologous end joining
FPKM:52.24 TPM:40.07
2156 A_BomoASG_c12901_g1_i1
466bp
FPKM:6.99 TPM:5.36
2157 A_BomoASG_c12902_g1_i1
235bp
FPKM:4.23 TPM:3.24
2158 A_BomoASG_c12905_g1_i1
3296bp
 inner_nuclear_membrane_protein_Man1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001525 P angiogenesis
GO:0002044 P blood vessel endothelial cell migration involved in intussusceptive angiogenesis
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005637 C nuclear inner membrane
GO:0005639 C integral component of nuclear inner membrane
GO:0006997 P nucleus organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030514 P negative regulation of BMP signaling pathway
GO:0032926 P negative regulation of activin receptor signaling pathway
GO:0035914 P skeletal muscle cell differentiation
GO:0051726 P regulation of cell cycle
GO:1903053 P regulation of extracellular matrix organization
FPKM:39.36 TPM:30.19
2159 A_BomoASG_c12905_g1_i2
499bp
FPKM:0.00 TPM:0.00
2160 A_BomoASG_c12906_g1_i1
280bp
FPKM:1.39 TPM:1.07
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