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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
991 A_TrvaMG_comp1170852_c0_seq1
228bp
FPKM:1.23 TPM:1.03
992 A_TrvaMG_comp1170867_c0_seq1
233bp
FPKM:1.15 TPM:0.97
993 A_TrvaMG_comp11708_c0_seq1
1307bp
FPKM:2.56 TPM:2.15
994 A_TrvaMG_comp1170905_c0_seq1
209bp
hypothetical_protein_[Enterobacter_cloacae]
FPKM:1.07 TPM:0.90
995 A_TrvaMG_comp1170972_c0_seq1
259bp
RNA_polymerase_subunit_sigma-70_[Clostridium_sp._DL-VIII]
FPKM:1.17 TPM:0.98
996 A_TrvaMG_comp1170974_c0_seq1
254bp
extensin_[Loktanella_sp._1ANDIMAR09]
FPKM:1.22 TPM:1.03
997 A_TrvaMG_comp11709_c0_seq1
662bp
PREDICTED:_exonuclease_mut-7_homolog_[Bombyx_mori]
FPKM:2.10 TPM:1.77
998 A_TrvaMG_comp117100_c0_seq1
381bp
FPKM:4.04 TPM:3.40
999 A_TrvaMG_comp11710_c0_seq1
1545bp
PREDICTED:_MAGUK_p55_subfamily_member_6_[Bombyx_mori]
GO:0004385 F guanylate kinase activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030165 F PDZ domain binding
GO:0046037 P GMP metabolic process
GO:0046710 P GDP metabolic process
GO:0070062 C extracellular exosome
FPKM:1.97 TPM:1.66
1000 A_TrvaMG_comp11711_c0_seq1
435bp
unknown_protein,_partial_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0000993 F RNA polymerase II complex binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008026 F helicase activity
GO:0009378 F four-way junction helicase activity
GO:0016591 C RNA polymerase II, holoenzyme
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0034244 P negative regulation of transcription elongation from RNA polymerase II promoter
GO:0043140 F 3'-5' DNA helicase activity
GO:0051301 P cell division
GO:0051304 P chromosome separation
FPKM:3.81 TPM:3.20
1001 A_TrvaMG_comp11712_c0_seq1
289bp
peptidase_S9_[Devosia_sp._LC5]
FPKM:1.59 TPM:1.34
1002 A_TrvaMG_comp11713_c0_seq1
276bp
FPKM:4.02 TPM:3.38
1003 A_TrvaMG_comp1171435_c0_seq1
277bp
FPKM:1.00 TPM:0.84
1004 A_TrvaMG_comp1171475_c0_seq1
236bp
Uncharacterized_protein_OBRU01_01517,_partial_[Operophtera_brumata]
FPKM:1.11 TPM:0.94
1005 A_TrvaMG_comp1171551_c0_seq1
227bp
hypothetical_protein_[Psychromonas_arctica]
FPKM:1.24 TPM:1.05
1006 A_TrvaMG_comp117158_c0_seq1
1617bp
PREDICTED:_plexin_domain-containing_protein_2_isoform_X2_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0070062 C extracellular exosome
FPKM:4.27 TPM:3.60
1007 A_TrvaMG_comp11715_c0_seq1
1580bp
PREDICTED:_sorting_nexin-16_[Papilio_polytes]
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005829 C cytosol
GO:0006622 P protein targeting to lysosome
GO:0006810 P transport
GO:0008289 F lipid binding
GO:0008333 P endosome to lysosome transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031313 C extrinsic component of endosome membrane
GO:0031901 C early endosome membrane
GO:0031902 C late endosome membrane
GO:0035091 F phosphatidylinositol binding
GO:0042802 F identical protein binding
GO:0045022 P early endosome to late endosome transport
FPKM:1.20 TPM:1.01
1008 A_TrvaMG_comp11715_c0_seq2
1817bp
PREDICTED:_sorting_nexin-16_[Papilio_polytes]
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005829 C cytosol
GO:0006622 P protein targeting to lysosome
GO:0006810 P transport
GO:0008289 F lipid binding
GO:0008333 P endosome to lysosome transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031313 C extrinsic component of endosome membrane
GO:0031901 C early endosome membrane
GO:0031902 C late endosome membrane
GO:0035091 F phosphatidylinositol binding
GO:0042802 F identical protein binding
GO:0045022 P early endosome to late endosome transport
FPKM:2.23 TPM:1.88
1009 A_TrvaMG_comp1171634_c0_seq1
231bp
FPKM:1.18 TPM:0.99
1010 A_TrvaMG_comp11716_c0_seq1
347bp
FPKM:3.81 TPM:3.20
1011 A_TrvaMG_comp11716_c1_seq1
283bp
FPKM:3.80 TPM:3.20
1012 A_TrvaMG_comp1171717_c0_seq1
262bp
putative_Zinc_finger_protein_26_[Operophtera_brumata]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.13 TPM:0.95
1013 A_TrvaMG_comp11717_c0_seq1
423bp
FPKM:2.27 TPM:1.91
1014 A_TrvaMG_comp1171860_c0_seq1
252bp
FPKM:0.62 TPM:0.52
1015 A_TrvaMG_comp117186_c0_seq1
483bp
FPKM:7.61 TPM:6.41
1016 A_TrvaMG_comp1171921_c0_seq1
244bp
FPKM:1.02 TPM:0.86
1017 A_TrvaMG_comp1171965_c0_seq1
307bp
PREDICTED:_putative_epidermal_cell_surface_receptor_[Bombyx_mori]
FPKM:1.00 TPM:0.84
1018 A_TrvaMG_comp11719_c0_seq1
318bp
23S_rRNA_(uracil(1939)-C(5))-methyltransferase_[Thiorhodospira_sibirica]
FPKM:1.49 TPM:1.26
1019 A_TrvaMG_comp11720_c0_seq1
626bp
FPKM:2.78 TPM:2.34
1020 A_TrvaMG_comp11721_c0_seq1
286bp
glycoside_hydrolase_family_1_[Phyllotreta_striolata]
GO:0004553 F hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975 P carbohydrate metabolic process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0019137 F thioglucosidase activity
GO:0046872 F metal ion binding
FPKM:3.02 TPM:2.54
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