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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
841 A_TrvaMG_comp11587_c0_seq1
1735bp
non-ribosomal_peptide_synthetase_[Brevibacillus_borstelensis]
FPKM:2.20 TPM:1.85
842 A_TrvaMG_comp11588_c0_seq1
369bp
FPKM:0.00 TPM:0.00
843 A_TrvaMG_comp11588_c0_seq2
655bp
FPKM:3.05 TPM:2.56
844 A_TrvaMG_comp11589_c0_seq1
878bp
PREDICTED:_gem-associated_protein_2-like_[Papilio_machaon]
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0032797 C SMN complex
GO:0034719 C SMN-Sm protein complex
GO:0097504 C Gemini of coiled bodies
FPKM:2.70 TPM:2.27
845 A_TrvaMG_comp1158_c0_seq1
252bp
hypothetical_protein_[Novosphingobium_sp._KN65.2]
FPKM:0.62 TPM:0.52
846 A_TrvaMG_comp11590_c0_seq1
370bp
PREDICTED:_HCLS1-associated_protein_X-1_[Sus_scrofa]
FPKM:6.37 TPM:5.36
847 A_TrvaMG_comp115917_c0_seq1
346bp
hypothetical_protein_HOLDEFILI_02034_[Holdemania_filiformis_DSM_12042]
FPKM:6.69 TPM:5.64
848 A_TrvaMG_comp11591_c0_seq1
321bp
FPKM:4.95 TPM:4.17
849 A_TrvaMG_comp11592_c0_seq1
1551bp
PREDICTED:_A-kinase_anchor_protein_17A_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0007165 P signal transduction
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0042113 P B cell activation
GO:0043484 P regulation of RNA splicing
GO:0044822 F RNA binding
GO:0051018 F protein kinase A binding
FPKM:2.82 TPM:2.37
850 A_TrvaMG_comp11593_c0_seq1
651bp
RNA_binding_motif_protein_X-linked_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000384 F first spliceosomal transesterification activity
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005686 C U2 snRNP
GO:0006406 P mRNA export from nucleus
GO:0044822 F RNA binding
GO:0070274 C RES complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:3.01 TPM:2.53
851 A_TrvaMG_comp11595_c0_seq1
283bp
succinate_dehydrogenase,_cytochrome_b556_subunit_[Mesorhizobium_sp._L48C026A00]
FPKM:2.14 TPM:1.80
852 A_TrvaMG_comp11597_c0_seq1
1699bp
PREDICTED:_actin-binding_protein_IPP-like_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0015629 C actin cytoskeleton
GO:0016567 P protein ubiquitination
GO:0031463 C Cul3-RING ubiquitin ligase complex
FPKM:2.72 TPM:2.29
853 A_TrvaMG_comp115986_c0_seq1
1414bp
glyoxylate_reductase/hydroxypyruvate_reductase_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005782 C peroxisomal matrix
GO:0005829 C cytosol
GO:0007588 P excretion
GO:0008152 P metabolic process
GO:0008465 F glycerate dehydrogenase activity
GO:0016491 F oxidoreductase activity
GO:0016616 F oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0016618 F hydroxypyruvate reductase activity
GO:0030267 F glyoxylate reductase (NADP+) activity
GO:0031406 F carboxylic acid binding
GO:0042803 F protein homodimerization activity
GO:0043648 P dicarboxylic acid metabolic process
GO:0046487 P glyoxylate metabolic process
GO:0050661 F NADP binding
GO:0051259 P protein complex oligomerization
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:0070402 F NADPH binding
FPKM:8.45 TPM:7.11
854 A_TrvaMG_comp11598_c0_seq1
1080bp
FPKM:2.37 TPM:1.99
855 A_TrvaMG_comp11598_c0_seq2
250bp
FPKM:0.38 TPM:0.32
856 A_TrvaMG_comp11599_c0_seq1
376bp
FPKM:3.86 TPM:3.25
857 A_TrvaMG_comp116005_c0_seq1
266bp
FPKM:2.19 TPM:1.84
858 A_TrvaMG_comp11600_c0_seq1
838bp
FPKM:3.52 TPM:2.97
859 A_TrvaMG_comp11600_c0_seq2
278bp
FPKM:3.70 TPM:3.12
860 A_TrvaMG_comp11601_c0_seq1
1858bp
PREDICTED:_uncharacterized_protein_LOC106718157_[Papilio_machaon]
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
FPKM:3.45 TPM:2.91
861 A_TrvaMG_comp11603_c0_seq1
228bp
FPKM:2.45 TPM:2.07
862 A_TrvaMG_comp11604_c0_seq1
1246bp
dnaJ_homolog_subfamily_C_member_28_[Bombyx_mori]
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0005515 F protein binding
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0017119 C Golgi transport complex
GO:0048213 P Golgi vesicle prefusion complex stabilization
FPKM:2.23 TPM:1.88
863 A_TrvaMG_comp11605_c0_seq1
1738bp
PREDICTED:_mkk7_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0001934 P positive regulation of protein phosphorylation
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0004708 F MAP kinase kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0006970 P response to osmotic stress
GO:0007165 P signal transduction
GO:0007254 P JNK cascade
GO:0007257 P obsolete activation of JUN kinase activity
GO:0008022 F protein C-terminus binding
GO:0008545 F JUN kinase kinase activity
GO:0009408 P response to heat
GO:0009411 P response to UV
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0019899 F enzyme binding
GO:0019901 F protein kinase binding
GO:0019903 F protein phosphatase binding
GO:0031435 F mitogen-activated protein kinase kinase kinase binding
GO:0032212 P positive regulation of telomere maintenance via telomerase
GO:0034612 P response to tumor necrosis factor
GO:0035897 P obsolete proteolysis in other organism
GO:0038095 P Fc-epsilon receptor signaling pathway
GO:0043525 P positive regulation of neuron apoptotic process
GO:0046872 F metal ion binding
GO:0051403 P stress-activated MAPK cascade
GO:0051973 P positive regulation of telomerase activity
GO:0072709 P cellular response to sorbitol
GO:1904355 P positive regulation of telomere capping
FPKM:3.73 TPM:3.14
864 A_TrvaMG_comp11606_c0_seq1
348bp
hypothetical_protein_[Candidatus_Midichloria_mitochondrii]
FPKM:3.31 TPM:2.79
865 A_TrvaMG_comp11607_c0_seq1
611bp
FPKM:2.20 TPM:1.86
866 A_TrvaMG_comp11608_c0_seq1
2431bp
PREDICTED:_ATP-dependent_RNA_helicase_SUV3_homolog,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000963 P mitochondrial RNA processing
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006119 P oxidative phosphorylation
GO:0016787 F hydrolase activity
GO:0016817 F hydrolase activity, acting on acid anhydrides
GO:0022904 P respiratory electron transport chain
GO:0032508 P DNA duplex unwinding
GO:0044528 P regulation of mitochondrial mRNA stability
GO:0070131 P positive regulation of mitochondrial translation
GO:0090646 P mitochondrial tRNA processing
GO:0097222 P mitochondrial mRNA polyadenylation
FPKM:2.81 TPM:2.37
867 A_TrvaMG_comp11609_c0_seq1
520bp
FPKM:2.84 TPM:2.39
868 A_TrvaMG_comp11610_c0_seq1
302bp
LacI_family_transcriptional_regulator_[Streptococcus_suis]
FPKM:1.66 TPM:1.39
869 A_TrvaMG_comp116114_c0_seq1
1404bp
PREDICTED:_uncharacterized_protein_LOC106142690_[Amyelois_transitella]
FPKM:4.93 TPM:4.15
870 A_TrvaMG_comp11611_c0_seq1
554bp
FPKM:1.98 TPM:1.67
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