SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaMG_comp11593_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		RNA_binding_motif_protein_X-linked_2_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000384 F first spliceosomal transesterification activity
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005686 C U2 snRNP
GO:0006406 P mRNA export from nucleus
GO:0044822 F RNA binding
GO:0070274 C RES complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:3.01 TPM:2.53
ORF EntryO_TrvaMG292_3prime_partial:A_TrvaMG_comp11593_c0_seq1
Sequence
(Nucleotide)
TTTTTTTCCAGTATCCGTGTTGTTTTAATTTCAAATATTTAAATTAAAATTGTCAGTATA
AGTTTTTCTTTTAACGTATTCACCCATTCCAAAGTGATTCGAATCGAATTACAATGAATC
CTATGACAAACGTGAAAAATGTATTGAAACTAAGTGAACGAGAATTGGGAAATAAGTCCA
AAAGTTCTTGGCACGATCAGTACAGAGATAGTGCATGGATATTTGTTGGTGGACTACCAT
ATGATTTGACCGAAGGAGATGTTATTTGTGTTTTTTCTCAGTATGGTGAAATAGTAAATA
TCAACATGGTAAGGGATAAAGCAACAGGGAAACCAAAAGGATTTGCTTTTTTGTGTTACG
AAGATCAAAGATCTACAATTTTGGCAGTAGACAATCTCAATGGTATCAAGATTCTTGGGC
GCACTTTACGTGTTGATCATTGTGAACAATACAAGGTACCTAATGCCGACATGAGTAAAA
TTGATGAAGTCACAGCTACAATTAGAATGGAAGGATGTGCACCAGTTGCACCTAAAGTTG
AAACTGTAGTTGTTAAGCAGGTAACTGTAAAGGAAGGAAAAGTTAAGAAAAAGAAGAGTA
AAGTGAAAAAGAGTAAAAAGAAAAAGAAGAAATCAAAAAGCTCTGATTCTG
(651 bp)

- SilkBase 1999-2023 -