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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
871 A_TrvaMG_comp116127_c0_seq1
458bp
FPKM:7.14 TPM:6.01
872 A_TrvaMG_comp116129_c0_seq1
298bp
FPKM:1.28 TPM:1.07
873 A_TrvaMG_comp11612_c0_seq1
645bp
FPKM:2.11 TPM:1.78
874 A_TrvaMG_comp11613_c0_seq1
397bp
FPKM:3.77 TPM:3.18
875 A_TrvaMG_comp11614_c0_seq1
1118bp
PREDICTED:_LOW_QUALITY_PROTEIN:_protein_split_ends_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007379 P segment specification
GO:0007400 P neuroblast fate determination
GO:0007403 P glial cell fate determination
GO:0007411 P axon guidance
GO:0007422 P peripheral nervous system development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0016055 P Wnt signaling pathway
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035222 P wing disc pattern formation
GO:0035321 P maintenance of imaginal disc-derived wing hair orientation
GO:0048106 P establishment of thoracic bristle planar orientation
GO:0048749 P compound eye development
GO:0050832 P defense response to fungus
FPKM:2.44 TPM:2.05
876 A_TrvaMG_comp11616_c0_seq1
894bp
PREDICTED:_PH_and_SEC7_domain-containing_protein_2_isoform_X3_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005886 C plasma membrane
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0032011 P ARF protein signal transduction
GO:0032012 P regulation of ARF protein signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
FPKM:3.38 TPM:2.85
877 A_TrvaMG_comp11618_c0_seq1
3139bp
PREDICTED:_E3_ubiquitin-protein_ligase_SMURF2_isoform_X1_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0002230 P positive regulation of defense response to virus by host
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006611 P protein export from nucleus
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030154 P cell differentiation
GO:0030279 P negative regulation of ossification
GO:0030424 C axon
GO:0030509 P BMP signaling pathway
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030579 P ubiquitin-dependent SMAD protein catabolic process
GO:0032801 P receptor catabolic process
GO:0034394 P protein localization to cell surface
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043025 C neuronal cell body
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0061736 P engulfment of target by autophagosome
GO:0070062 C extracellular exosome
GO:0070411 F I-SMAD binding
GO:0070412 F R-SMAD binding
GO:0071211 P protein targeting to vacuole involved in autophagy
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:1903861 P positive regulation of dendrite extension
GO:2000060 P positive regulation of ubiquitin-dependent protein catabolic process
FPKM:2.94 TPM:2.48
878 A_TrvaMG_comp116192_c0_seq1
345bp
FPKM:4.17 TPM:3.51
879 A_TrvaMG_comp11619_c0_seq1
1160bp
PREDICTED:_SAYSvFN_domain-containing_protein_1_[Amyelois_transitella]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0043231 C intracellular membrane-bounded organelle
FPKM:2.64 TPM:2.22
880 A_TrvaMG_comp1162089_c0_seq1
231bp
FPKM:1.58 TPM:1.33
881 A_TrvaMG_comp11621_c0_seq1
203bp
FPKM:1.78 TPM:1.50
882 A_TrvaMG_comp116259_c0_seq1
370bp
FPKM:5.38 TPM:4.53
883 A_TrvaMG_comp116261_c0_seq1
280bp
FPKM:5.10 TPM:4.30
884 A_TrvaMG_comp11628_c0_seq1
897bp
PREDICTED:_HIG1_domain_family_member_1A,_mitochondrial-like_[Amyelois_transitella]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:3.70 TPM:3.11
885 A_TrvaMG_comp11629_c0_seq1
319bp
FPKM:2.78 TPM:2.34
886 A_TrvaMG_comp11629_c1_seq1
417bp
FPKM:3.02 TPM:2.54
887 A_TrvaMG_comp11630_c0_seq1
714bp
PREDICTED:_DNA_repair_protein_RAD52_homolog_isoform_X2_[Amyelois_transitella]
GO:0000724 P double-strand break repair via homologous recombination
GO:0000730 P DNA recombinase assembly
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0010792 P DNA double-strand break processing involved in repair via single-strand annealing
GO:0034599 P cellular response to oxidative stress
GO:0042802 F identical protein binding
GO:0043234 C protein-containing complex
GO:0045002 P double-strand break repair via single-strand annealing
GO:2000819 P regulation of nucleotide-excision repair
FPKM:3.76 TPM:3.17
888 A_TrvaMG_comp11631_c0_seq1
1258bp
TBP_SPOFR_RecName:_Full=TATA-box-binding_protein;_AltName:_Full=TATA_sequence-binding_protein;_Short=TBP;_AltName:_Full=TATA-binding_factor;_AltName:_Full=TATA-box_factor;_AltName:_Full=Transcription_initiation_factor_TFIID_TBP_subunit
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
FPKM:3.89 TPM:3.28
889 A_TrvaMG_comp11632_c0_seq1
543bp
PREDICTED:_transmembrane_protein_186_[Papilio_xuthus]
GO:0005739 C mitochondrion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:4.55 TPM:3.83
890 A_TrvaMG_comp11633_c0_seq1
643bp
PREDICTED:_LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_24_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0007517 P muscle organ development
GO:0016592 C mediator complex
GO:0035070 P salivary gland histolysis
GO:0035072 P ecdysone-mediated induction of salivary gland cell autophagic cell death
GO:0035209 P pupal development
GO:0043067 P regulation of programmed cell death
GO:0043068 P positive regulation of programmed cell death
GO:0048813 P dendrite morphogenesis
FPKM:2.56 TPM:2.15
891 A_TrvaMG_comp11634_c0_seq1
1942bp
PREDICTED:_putative_transcription_factor_capicua_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0003677 F DNA binding
GO:0003712 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007362 P terminal region determination
GO:0007474 P imaginal disc-derived wing vein specification
GO:0030308 P negative regulation of cell growth
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046843 P dorsal appendage formation
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:0048592 P eye morphogenesis
GO:0070491 F DNA-binding transcription factor binding
FPKM:2.80 TPM:2.35
892 A_TrvaMG_comp11635_c0_seq1
455bp
FPKM:2.84 TPM:2.39
893 A_TrvaMG_comp11636_c0_seq1
934bp
FPKM:2.89 TPM:2.44
894 A_TrvaMG_comp11637_c0_seq1
471bp
FPKM:3.95 TPM:3.33
895 A_TrvaMG_comp11638_c0_seq1
1975bp
PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_calypso_isoform_X2_[Bombyx_mori]
GO:0000790 C chromatin
GO:0003682 F chromatin binding
GO:0004843 F thiol-dependent deubiquitinase
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006342 P heterochromatin assembly
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0035517 C PR-DUB complex
GO:0035522 P monoubiquitinated histone H2A deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
FPKM:3.30 TPM:2.78
896 A_TrvaMG_comp11639_c0_seq1
859bp
PREDICTED:_uncharacterized_protein_LOC105842554_[Bombyx_mori]
FPKM:0.50 TPM:0.42
897 A_TrvaMG_comp11639_c0_seq2
713bp
PREDICTED:_uncharacterized_protein_LOC105842554_[Bombyx_mori]
FPKM:2.59 TPM:2.18
898 A_TrvaMG_comp11640_c0_seq1
439bp
hypothetical_protein_RR48_09052_[Papilio_machaon]
FPKM:3.11 TPM:2.62
899 A_TrvaMG_comp11640_c0_seq2
238bp
hypothetical_protein_RR48_09052_[Papilio_machaon]
FPKM:2.90 TPM:2.44
900 A_TrvaMG_comp116419_c0_seq1
379bp
predicted_protein_[Physcomitrella_patens]
FPKM:8.97 TPM:7.55
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