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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
721 A_TrvaMG_comp114873_c0_seq1
1004bp
DID_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030335 P positive regulation of cell migration
GO:0033588 C elongator holoenzyme complex
FPKM:6.64 TPM:5.59
722 A_TrvaMG_comp11487_c0_seq1
317bp
FPKM:3.57 TPM:3.00
723 A_TrvaMG_comp11488_c0_seq1
368bp
PREDICTED:_single-strand_selective_monofunctional_uracil_DNA_glycosylase_[Papilio_polytes]
GO:0000703 F oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
GO:0003677 F DNA binding
GO:0004844 F uracil DNA N-glycosylase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0017065 F single-strand selective uracil DNA N-glycosylase activity
GO:0019104 F DNA N-glycosylase activity
GO:0031981 C nuclear lumen
FPKM:2.43 TPM:2.05
724 A_TrvaMG_comp114893_c0_seq1
422bp
FPKM:4.45 TPM:3.74
725 A_TrvaMG_comp11489_c0_seq1
287bp
PREDICTED:_focal_adhesion_kinase_1_[Bombyx_mori]
FPKM:3.22 TPM:2.71
726 A_TrvaMG_comp1149059_c0_seq1
303bp
FPKM:1.03 TPM:0.87
727 A_TrvaMG_comp11490_c0_seq1
770bp
FPKM:2.38 TPM:2.00
728 A_TrvaMG_comp11491_c0_seq1
237bp
FPKM:5.50 TPM:4.63
729 A_TrvaMG_comp11492_c0_seq1
275bp
FPKM:1.37 TPM:1.15
730 A_TrvaMG_comp11492_c0_seq2
231bp
FPKM:2.60 TPM:2.19
731 A_TrvaMG_comp11493_c0_seq1
416bp
FPKM:2.68 TPM:2.26
732 A_TrvaMG_comp11493_c1_seq1
444bp
FPKM:2.21 TPM:1.86
733 A_TrvaMG_comp11494_c0_seq1
395bp
FPKM:3.30 TPM:2.78
734 A_TrvaMG_comp11494_c1_seq1
213bp
FPKM:1.01 TPM:0.85
735 A_TrvaMG_comp114968_c0_seq1
525bp
FPKM:3.87 TPM:3.26
736 A_TrvaMG_comp11496_c0_seq1
2570bp
PREDICTED:_dyslexia-associated_protein_KIAA0319_[Bombyx_mori]
GO:0001764 P neuron migration
GO:0005515 F protein binding
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031901 C early endosome membrane
GO:2000171 P negative regulation of dendrite development
FPKM:3.19 TPM:2.69
737 A_TrvaMG_comp114980_c0_seq1
272bp
PREDICTED:_transmembrane_protein_95_[Cricetulus_griseus]
FPKM:12.19 TPM:10.27
738 A_TrvaMG_comp11498_c0_seq1
313bp
PREDICTED:_uncharacterized_protein_LOC106130937_[Amyelois_transitella]
FPKM:0.00 TPM:0.00
739 A_TrvaMG_comp11498_c0_seq2
833bp
PREDICTED:_multivesicular_body_subunit_12A_[Papilio_xuthus]
GO:0000813 C ESCRT I complex
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019075 P virus maturation
GO:0031902 C late endosome membrane
GO:0031982 C vesicle
GO:0042058 P regulation of epidermal growth factor receptor signaling pathway
GO:0043130 F ubiquitin binding
GO:0043162 P ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
GO:0048524 P positive regulation of viral process
GO:0070062 C extracellular exosome
FPKM:2.79 TPM:2.35
740 A_TrvaMG_comp11499_c0_seq1
524bp
FPKM:1.65 TPM:1.39
741 A_TrvaMG_comp11501_c0_seq1
1518bp
FPKM:2.26 TPM:1.90
742 A_TrvaMG_comp11502_c0_seq1
230bp
FPKM:2.39 TPM:2.01
743 A_TrvaMG_comp11503_c0_seq1
345bp
Xaa-Pro_aminopeptidase_1_[Podiceps_cristatus]
FPKM:4.49 TPM:3.78
744 A_TrvaMG_comp11504_c0_seq1
585bp
PREDICTED:_E3_ubiquitin-protein_ligase_LRSAM1-like_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005876 C spindle microtubule
GO:0006915 P apoptotic process
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031398 P positive regulation of protein ubiquitination
GO:0034121 P regulation of toll-like receptor signaling pathway
GO:0042326 P negative regulation of phosphorylation
GO:0042981 P regulation of apoptotic process
GO:0043027 F cysteine-type endopeptidase inhibitor activity involved in apoptotic process
GO:0046872 F metal ion binding
GO:0060544 P regulation of necroptotic process
GO:0060546 P negative regulation of necroptotic process
GO:0070266 P necroptotic process
GO:0090307 P mitotic spindle assembly
GO:1990001 P inhibition of cysteine-type endopeptidase activity involved in apoptotic process
GO:2000378 P negative regulation of reactive oxygen species metabolic process
FPKM:2.83 TPM:2.39
745 A_TrvaMG_comp11504_c0_seq2
1814bp
PREDICTED:_E3_ubiquitin-protein_ligase_LRSAM1-like_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0006914 P autophagy
GO:0008270 F zinc ion binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030163 P protein catabolic process
GO:0045806 P negative regulation of endocytosis
GO:0046755 P viral budding
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0070086 P ubiquitin-dependent endocytosis
GO:1904417 P positive regulation of xenophagy
GO:2000786 P positive regulation of autophagosome assembly
FPKM:2.00 TPM:1.69
746 A_TrvaMG_comp11505_c0_seq1
238bp
FPKM:0.72 TPM:0.61
747 A_TrvaMG_comp11506_c0_seq1
564bp
PREDICTED:_lipopolysaccharide-induced_tumor_necrosis_factor-alpha_factor_homolog_[Papilio_xuthus]
GO:0005125 F cytokine activity
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
FPKM:3.57 TPM:3.01
748 A_TrvaMG_comp11507_c0_seq1
926bp
PREDICTED:_AT-rich_interactive_domain-containing_protein_5B-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001227 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001822 P kidney development
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006807 P nitrogen compound metabolic process
GO:0008584 P male gonad development
GO:0008585 P female gonad development
GO:0009791 P post-embryonic development
GO:0010761 P fibroblast migration
GO:0030325 P adrenal gland development
GO:0035264 P multicellular organism growth
GO:0044212 F transcription cis-regulatory region binding
GO:0045444 P fat cell differentiation
GO:0048008 P platelet-derived growth factor receptor signaling pathway
GO:0048468 P cell development
GO:0048644 P muscle organ morphogenesis
GO:0048705 P skeletal system morphogenesis
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0060021 P roof of mouth development
GO:0060325 P face morphogenesis
GO:0060612 P adipose tissue development
GO:0060613 P fat pad development
FPKM:2.96 TPM:2.49
749 A_TrvaMG_comp11507_c0_seq2
1343bp
PREDICTED:_AT-rich_interactive_domain-containing_protein_5B-like_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0044212 F transcription cis-regulatory region binding
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0060612 P adipose tissue development
FPKM:2.74 TPM:2.31
750 A_TrvaMG_comp11508_c0_seq1
1579bp
PREDICTED:_transmembrane_protein_62-like_[Bombyx_mori]
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
FPKM:2.29 TPM:1.93
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