SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/37360
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
691 A_TrvaMG_comp11456_c0_seq1
1008bp
PREDICTED:_uncharacterized_protein_LOC101742598_isoform_X2_[Bombyx_mori]
FPKM:2.43 TPM:2.04
692 A_TrvaMG_comp11456_c1_seq1
1362bp
PREDICTED:_uncharacterized_protein_LOC101742598_isoform_X2_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001764 P neuron migration
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0010629 P negative regulation of gene expression
GO:0021610 P facial nerve morphogenesis
GO:0021785 P branchiomotor neuron axon guidance
GO:0022008 P neurogenesis
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0046872 F metal ion binding
GO:0060831 P smoothened signaling pathway involved in dorsal/ventral neural tube patterning
FPKM:1.89 TPM:1.59
693 A_TrvaMG_comp11458_c0_seq1
1207bp
Adenylate_cyclase_[Operophtera_brumata]
GO:0005542 F folic acid binding
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:1.77 TPM:1.49
694 A_TrvaMG_comp11459_c0_seq1
241bp
FPKM:2.80 TPM:2.36
695 A_TrvaMG_comp11460_c0_seq1
713bp
PREDICTED:_dedicator_of_cytokinesis_protein_4_[Papilio_xuthus]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007264 P small GTPase mediated signal transduction
GO:0017124 F SH3 domain binding
GO:0043547 P positive regulation of GTPase activity
FPKM:2.13 TPM:1.79
696 A_TrvaMG_comp11461_c0_seq1
381bp
FPKM:3.64 TPM:3.06
697 A_TrvaMG_comp11462_c0_seq1
1429bp
PREDICTED:_DNA_ligase_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0071897 P DNA biosynthetic process
FPKM:1.87 TPM:1.57
698 A_TrvaMG_comp11463_c0_seq1
671bp
PREDICTED:_protein_D7-like_[Amyelois_transitella]
GO:0046872 F metal ion binding
FPKM:2.66 TPM:2.24
699 A_TrvaMG_comp11464_c0_seq1
226bp
PREDICTED:_uncharacterized_protein_K02A2.6-like_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:5.46 TPM:4.60
700 A_TrvaMG_comp11465_c0_seq1
747bp
FPKM:2.11 TPM:1.78
701 A_TrvaMG_comp11467_c0_seq1
551bp
FPKM:2.23 TPM:1.88
702 A_TrvaMG_comp11468_c0_seq1
771bp
hypothetical_protein_FOYG_03406_[Fusarium_oxysporum_FOSC_3-a]
FPKM:2.37 TPM:2.00
703 A_TrvaMG_comp11473_c0_seq1
316bp
FPKM:2.08 TPM:1.75
704 A_TrvaMG_comp11474_c0_seq1
1508bp
PREDICTED:_LOW_QUALITY_PROTEIN:_E2/E3_hybrid_ubiquitin-protein_ligase_UBE2O_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006513 P protein monoubiquitination
GO:0006810 P transport
GO:0016567 P protein ubiquitination
GO:0016740 F transferase activity
GO:0030513 P positive regulation of BMP signaling pathway
GO:0031625 F ubiquitin protein ligase binding
GO:0042147 P retrograde transport, endosome to Golgi
GO:0044822 F RNA binding
GO:0061630 F ubiquitin protein ligase activity
GO:0061631 F ubiquitin conjugating enzyme activity
GO:0070534 P protein K63-linked ubiquitination
FPKM:1.89 TPM:1.59
705 A_TrvaMG_comp114753_c0_seq1
1245bp
FPKM:5.98 TPM:5.04
706 A_TrvaMG_comp114755_c0_seq1
1584bp
PREDICTED:_U5_small_nuclear_ribonucleoprotein_40_kDa_protein_isoform_X2_[Amyelois_transitella]
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:6.76 TPM:5.69
707 A_TrvaMG_comp11475_c0_seq1
961bp
Uncharacterized_protein_OBRU01_06556_[Operophtera_brumata]
FPKM:2.19 TPM:1.85
708 A_TrvaMG_comp11476_c0_seq1
218bp
FPKM:5.62 TPM:4.73
709 A_TrvaMG_comp11476_c1_seq1
281bp
FPKM:3.13 TPM:2.64
710 A_TrvaMG_comp1147729_c0_seq1
201bp
PREDICTED:_connector_enhancer_of_kinase_suppressor_of_ras_3_[Papilio_machaon]
FPKM:2.46 TPM:2.07
711 A_TrvaMG_comp11477_c0_seq1
436bp
PREDICTED:_transcription_initiation_factor_TFIID_subunit_1_isoform_X2_[Amyelois_transitella]
FPKM:2.71 TPM:2.28
712 A_TrvaMG_comp11477_c1_seq1
1154bp
Transcription_initiation_factor_TFIID_subunit_1_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0001129 F obsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
GO:0003677 F DNA binding
GO:0004402 F histone acetyltransferase activity
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005669 C transcription factor TFIID complex
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006461 P protein-containing complex assembly
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007221 P positive regulation of transcription of Notch receptor target
GO:0008134 F transcription factor binding
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016573 P histone acetylation
GO:0016740 F transferase activity
GO:0022008 P neurogenesis
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046425 P regulation of receptor signaling pathway via JAK-STAT
GO:0051123 P RNA polymerase II preinitiation complex assembly
GO:0051726 P regulation of cell cycle
GO:0060261 P positive regulation of transcription initiation from RNA polymerase II promoter
FPKM:2.26 TPM:1.90
713 A_TrvaMG_comp11478_c0_seq1
578bp
anaphase_promoting_complex_subunit_10_[Bombyx_mori]
GO:0005680 C anaphase-promoting complex
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007092 P positive regulation of ubiquitin protein ligase activity
GO:0007113 P endomitotic cell cycle
GO:0008054 P anaphase-promoting complex-dependent catabolic process
GO:0019233 P sensory perception of pain
GO:0022008 P neurogenesis
GO:0030071 P regulation of mitotic metaphase/anaphase transition
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0051301 P cell division
GO:0070979 P protein K11-linked ubiquitination
GO:0090302 F ubiquitin protein ligase activity
FPKM:2.59 TPM:2.18
714 A_TrvaMG_comp1147_c0_seq1
223bp
FPKM:0.87 TPM:0.74
715 A_TrvaMG_comp11480_c0_seq1
435bp
PREDICTED:_C3_and_PZP-like_alpha-2-macroglobulin_domain-containing_protein_8_isoform_X2_[Amyelois_transitella]
GO:0004866 F endopeptidase inhibitor activity
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0016020 C membrane
GO:0030414 F peptidase inhibitor activity
FPKM:1.52 TPM:1.28
716 A_TrvaMG_comp11482_c0_seq1
638bp
FPKM:2.40 TPM:2.02
717 A_TrvaMG_comp11484_c0_seq1
893bp
PREDICTED:_longitudinals_lacking_protein,_isoforms_H/M/V-like_[Amyelois_transitella]
GO:0000794 C condensed nuclear chromosome
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007435 P salivary gland morphogenesis
GO:0016458 P obsolete gene silencing
GO:0016568 P chromatin organization
GO:0031208 F POZ domain binding
GO:0031519 C PcG protein complex
GO:0035167 P larval lymph gland hemopoiesis
GO:0042803 F protein homodimerization activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
FPKM:1.69 TPM:1.42
718 A_TrvaMG_comp11485_c0_seq1
553bp
PREDICTED:_uncharacterized_protein_LOC106709922_[Papilio_machaon]
FPKM:2.37 TPM:2.00
719 A_TrvaMG_comp11486_c0_seq1
752bp
Protein_asteroid_[Operophtera_brumata]
GO:0001745 P compound eye morphogenesis
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007526 P larval somatic muscle development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
FPKM:1.58 TPM:1.33
720 A_TrvaMG_comp1148723_c0_seq1
214bp
FPKM:0.50 TPM:0.42
previous next from show/37360

- SilkBase 1999-2023 -