SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/37360
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1771 A_TrvaMG_comp12162_c0_seq1
499bp
PREDICTED:_histone-lysine_N-methyltransferase_2C-like_[Amyelois_transitella]
FPKM:2.04 TPM:1.71
1772 A_TrvaMG_comp12162_c1_seq1
463bp
PREDICTED:_histone-lysine_N-methyltransferase_2D-like,_partial_[Bombyx_mori]
FPKM:2.37 TPM:2.00
1773 A_TrvaMG_comp1216373_c0_seq1
271bp
PREDICTED:_kinesin-like_protein_unc-104_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0007018 P microtubule-based movement
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
GO:0047496 P vesicle transport along microtubule
GO:0048489 P synaptic vesicle transport
FPKM:1.05 TPM:0.88
1774 A_TrvaMG_comp12163_c0_seq1
2634bp
PREDICTED:_glutamate_receptor_ionotropic,_NMDA_2B-like_[Bombyx_mori]
GO:0004872 F signaling receptor activity
GO:0004970 F ionotropic glutamate receptor activity
GO:0004972 F NMDA glutamate receptor activity
GO:0005216 F ion channel activity
GO:0005234 F extracellularly glutamate-gated ion channel activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016594 F glycine binding
GO:0017146 C NMDA selective glutamate receptor complex
GO:0030054 C cell junction
GO:0034220 P ion transmembrane transport
GO:0035235 P ionotropic glutamate receptor signaling pathway
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0045471 P response to ethanol
GO:0046872 F metal ion binding
FPKM:1.92 TPM:1.61
1775 A_TrvaMG_comp12163_c1_seq1
450bp
PREDICTED:_glutamate_receptor_ionotropic,_NMDA_2B-like_[Bombyx_mori]
FPKM:1.24 TPM:1.04
1776 A_TrvaMG_comp1216465_c0_seq1
214bp
PREDICTED:_uncharacterized_protein_LOC101735325_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007155 P cell adhesion
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0051015 F actin filament binding
GO:0055120 C striated muscle dense body
FPKM:1.49 TPM:1.26
1777 A_TrvaMG_comp12165_c0_seq1
364bp
FPKM:1.60 TPM:1.35
1778 A_TrvaMG_comp12166_c0_seq1
218bp
SLIT-ROBO_Rho_GTPase-activating_protein_1_[Papilio_xuthus]
FPKM:1.87 TPM:1.58
1779 A_TrvaMG_comp12167_c0_seq1
297bp
hypothetical_protein_NAPIS_ORF00905_[Nosema_apis_BRL_01]
FPKM:2.36 TPM:1.98
1780 A_TrvaMG_comp12168_c0_seq1
495bp
FPKM:1.34 TPM:1.13
1781 A_TrvaMG_comp1216_c0_seq1
234bp
hypothetical_protein_AOL_s00173g248_[Arthrobotrys_oligospora_ATCC_24927]
FPKM:1.14 TPM:0.96
1782 A_TrvaMG_comp1217141_c0_seq1
229bp
FPKM:0.81 TPM:0.68
1783 A_TrvaMG_comp12171_c0_seq1
616bp
FPKM:3.44 TPM:2.89
1784 A_TrvaMG_comp1217266_c0_seq1
207bp
FPKM:0.56 TPM:0.47
1785 A_TrvaMG_comp1217284_c0_seq1
234bp
PREDICTED:_zinc_finger_protein_782-like,_partial_[Priapulus_caudatus]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0046872 F metal ion binding
FPKM:1.14 TPM:0.96
1786 A_TrvaMG_comp121729_c0_seq1
630bp
hypothetical_protein_RR48_01882_[Papilio_machaon]
FPKM:8.02 TPM:6.75
1787 A_TrvaMG_comp1217378_c0_seq1
206bp
FPKM:1.69 TPM:1.43
1788 A_TrvaMG_comp12173_c0_seq1
495bp
PREDICTED:_tRNA_(cytidine(32)-2'-O)-methyltransferase_non-catalytic_subunit_TRM732_[Bombyx_mori]
FPKM:1.52 TPM:1.28
1789 A_TrvaMG_comp12174_c0_seq1
1123bp
PREDICTED:_adenosine_receptor_A3_[Amyelois_transitella]
GO:0001609 F G protein-coupled adenosine receptor activity
GO:0001973 P G protein-coupled adenosine receptor signaling pathway
GO:0002882 P positive regulation of chronic inflammatory response to non-antigenic stimulus
GO:0004871 F obsolete signal transducer activity
GO:0004930 F G protein-coupled receptor activity
GO:0005886 C plasma membrane
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007189 P adenylate cyclase-activating G protein-coupled receptor signaling pathway
GO:0010575 P positive regulation of vascular endothelial growth factor production
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030819 P obsolete positive regulation of cAMP biosynthetic process
GO:0030828 P obsolete positive regulation of cGMP biosynthetic process
GO:0031284 P positive regulation of guanylate cyclase activity
GO:0031668 P cellular response to extracellular stimulus
GO:0032722 P positive regulation of chemokine production
GO:0032755 P positive regulation of interleukin-6 production
GO:0043306 P positive regulation of mast cell degranulation
GO:0060087 P relaxation of vascular associated smooth muscle
FPKM:1.26 TPM:1.06
1790 A_TrvaMG_comp1217553_c0_seq1
203bp
hypothetical_protein_[Trichomonas_vaginalis_G3]
FPKM:1.78 TPM:1.50
1791 A_TrvaMG_comp12175_c0_seq1
399bp
hypothetical_protein_RR46_14483_[Papilio_xuthus]
FPKM:2.00 TPM:1.68
1792 A_TrvaMG_comp121760_c0_seq1
349bp
FPKM:8.32 TPM:7.00
1793 A_TrvaMG_comp1217635_c0_seq1
209bp
UPF0672_protein_C3orf58_[Papilio_xuthus]
FPKM:1.07 TPM:0.90
1794 A_TrvaMG_comp12176_c0_seq1
202bp
FPKM:3.02 TPM:2.55
1795 A_TrvaMG_comp1217734_c0_seq1
217bp
PREDICTED:_filamentous_growth_regulator_23-like_[Papilio_polytes]
FPKM:1.43 TPM:1.20
1796 A_TrvaMG_comp12177_c0_seq1
223bp
FPKM:3.06 TPM:2.58
1797 A_TrvaMG_comp1217893_c0_seq1
217bp
PREDICTED:_laminin_subunit_alpha_[Bombyx_mori]
GO:0001964 P startle response
GO:0002121 P inter-male aggressive behavior
GO:0005102 F signaling receptor binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005605 C basement membrane
GO:0007155 P cell adhesion
GO:0007411 P axon guidance
GO:0007417 P central nervous system development
GO:0007422 P peripheral nervous system development
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007498 P mesoderm development
GO:0007507 P heart development
GO:0008021 C synaptic vesicle
GO:0009887 P animal organ morphogenesis
GO:0009888 P tissue development
GO:0010906 P regulation of glucose metabolic process
GO:0016321 P female meiosis chromosome segregation
GO:0030054 C cell junction
GO:0030155 P regulation of cell adhesion
GO:0030334 P regulation of cell migration
GO:0030424 C axon
GO:0031410 C cytoplasmic vesicle
GO:0031987 P locomotion involved in locomotory behavior
GO:0033627 P cell adhesion mediated by integrin
GO:0034446 P substrate adhesion-dependent cell spreading
GO:0035001 P dorsal trunk growth, open tracheal system
GO:0035011 P melanotic encapsulation of foreign target
GO:0036062 C presynaptic periactive zone
GO:0042995 C cell projection
GO:0045202 C synapse
GO:0045886 P negative regulation of synaptic assembly at neuromuscular junction
GO:0045995 P regulation of embryonic development
GO:0048598 P embryonic morphogenesis
GO:0048854 P brain morphogenesis
FPKM:1.43 TPM:1.20
1798 A_TrvaMG_comp12178_c0_seq1
685bp
PREDICTED:_protein_toll-like_[Amyelois_transitella]
FPKM:1.49 TPM:1.26
1799 A_TrvaMG_comp12179_c0_seq1
1136bp
PREDICTED:_procollagen-lysine,2-oxoglutarate_5-dioxygenase_1_isoform_X1_[Bombyx_mori]
GO:0001701 P in utero embryonic development
GO:0001886 P endothelial cell morphogenesis
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0008104 P protein localization
GO:0008475 F procollagen-lysine 5-dioxygenase activity
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0021915 P neural tube development
GO:0030199 P collagen fibril organization
GO:0030867 C rough endoplasmic reticulum membrane
GO:0031418 F L-ascorbic acid binding
GO:0032870 P cellular response to hormone stimulus
GO:0033823 F procollagen glucosyltransferase activity
GO:0042311 P vasodilation
GO:0046872 F metal ion binding
GO:0048730 P epidermis morphogenesis
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0060425 P lung morphogenesis
GO:0070062 C extracellular exosome
GO:0070831 P basement membrane assembly
FPKM:1.68 TPM:1.41
1800 A_TrvaMG_comp12181_c0_seq1
459bp
PREDICTED:_uncharacterized_protein_LOC106119621_[Papilio_xuthus]
FPKM:1.80 TPM:1.52
previous next from show/37360

- SilkBase 1999-2023 -