SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/37360
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1741 A_TrvaMG_comp12142_c0_seq1
261bp
FPKM:1.43 TPM:1.20
1742 A_TrvaMG_comp12143_c0_seq1
418bp
FPKM:1.27 TPM:1.07
1743 A_TrvaMG_comp12144_c0_seq1
341bp
FPKM:1.64 TPM:1.38
1744 A_TrvaMG_comp1214693_c0_seq1
207bp
FPKM:1.11 TPM:0.93
1745 A_TrvaMG_comp12146_c0_seq1
231bp
FPKM:3.15 TPM:2.65
1746 A_TrvaMG_comp12146_c0_seq2
211bp
FPKM:0.52 TPM:0.44
1747 A_TrvaMG_comp12147_c0_seq1
1285bp
PREDICTED:_uncharacterized_protein_LOC106136522_isoform_X2_[Amyelois_transitella]
FPKM:2.40 TPM:2.02
1748 A_TrvaMG_comp12147_c1_seq1
464bp
PREDICTED:_uncharacterized_protein_LOC106136522_isoform_X2_[Amyelois_transitella]
FPKM:1.58 TPM:1.33
1749 A_TrvaMG_comp1214843_c0_seq1
318bp
hypothetical_protein_[Smithella_sp._ME-1]
FPKM:0.56 TPM:0.47
1750 A_TrvaMG_comp121486_c0_seq1
424bp
Nucleoporin_[Metarhizium_anisopliae_BRIP_53293]
FPKM:8.15 TPM:6.86
1751 A_TrvaMG_comp12150_c0_seq1
454bp
Fe-S_cluster_assembly_protein_HesB_[Vibrio_nigripulchritudo]
FPKM:3.26 TPM:2.74
1752 A_TrvaMG_comp12150_c1_seq1
868bp
FPKM:1.28 TPM:1.08
1753 A_TrvaMG_comp1215153_c0_seq1
229bp
PREDICTED:_ATP-dependent_DNA_helicase_PIF1_[Plutella_xylostella]
GO:0000002 P mitochondrial genome maintenance
GO:0000166 F nucleotide binding
GO:0000723 P telomere maintenance
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0043141 F 5'-3' DNA helicase activity
FPKM:1.62 TPM:1.36
1754 A_TrvaMG_comp12152_c0_seq1
365bp
PREDICTED:_uncharacterized_F-box/LRR-repeat_protein_C02F5.7-like_[Amyelois_transitella]
FPKM:1.45 TPM:1.22
1755 A_TrvaMG_comp12152_c1_seq1
1210bp
PREDICTED:_uncharacterized_F-box/LRR-repeat_protein_C02F5.7-like_[Amyelois_transitella]
GO:0035882 P defecation rhythm
GO:0043053 P dauer entry
FPKM:2.34 TPM:1.97
1756 A_TrvaMG_comp12154_c0_seq1
437bp
PREDICTED:_aprataxin_and_PNK-like_factor_isoform_X4_[Bombyx_mori]
FPKM:2.16 TPM:1.82
1757 A_TrvaMG_comp1215579_c0_seq1
245bp
PREDICTED:_dedicator_of_cytokinesis_protein_7_[Bombyx_mori]
FPKM:0.67 TPM:0.56
1758 A_TrvaMG_comp1215594_c0_seq1
201bp
FPKM:1.23 TPM:1.04
1759 A_TrvaMG_comp12155_c0_seq1
221bp
FPKM:4.49 TPM:3.78
1760 A_TrvaMG_comp12156_c0_seq1
418bp
FPKM:1.85 TPM:1.56
1761 A_TrvaMG_comp121570_c0_seq1
1774bp
PREDICTED:_ATP-sensitive_inward_rectifier_potassium_channel_11-like_[Papilio_xuthus]
GO:0005242 F inward rectifier potassium channel activity
GO:0005244 F voltage-gated ion channel activity
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006813 P potassium ion transport
GO:0008076 C voltage-gated potassium channel complex
GO:0010107 P potassium ion import across plasma membrane
GO:0014861 P regulation of skeletal muscle contraction via regulation of action potential
GO:0015693 P magnesium ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031224 C intrinsic component of membrane
GO:0034765 P regulation of ion transmembrane transport
GO:0042802 F identical protein binding
GO:0051289 P protein homotetramerization
GO:0055119 P relaxation of cardiac muscle
GO:0060306 P regulation of membrane repolarization
GO:0071805 P potassium ion transmembrane transport
GO:0086001 P cardiac muscle cell action potential
GO:0086002 P cardiac muscle cell action potential involved in contraction
GO:0086008 F voltage-gated potassium channel activity involved in cardiac muscle cell action potential repolarization
GO:0086011 P membrane repolarization during action potential
GO:0086013 P membrane repolarization during cardiac muscle cell action potential
GO:0086091 P regulation of heart rate by cardiac conduction
GO:0090076 P relaxation of skeletal muscle
FPKM:3.31 TPM:2.79
1762 A_TrvaMG_comp12157_c0_seq1
250bp
FPKM:2.23 TPM:1.87
1763 A_TrvaMG_comp12157_c1_seq1
258bp
FPKM:1.18 TPM:0.99
1764 A_TrvaMG_comp1215833_c0_seq1
458bp
PREDICTED:_uncharacterized_protein_LOC105276781_[Cerapachys_biroi]
FPKM:0.70 TPM:0.59
1765 A_TrvaMG_comp1215892_c0_seq1
204bp
PREDICTED:_zinc_finger_protein_660-like_[Bombyx_mori]
FPKM:1.17 TPM:0.98
1766 A_TrvaMG_comp12158_c0_seq1
209bp
FPKM:0.54 TPM:0.45
1767 A_TrvaMG_comp12159_c0_seq1
244bp
FPKM:2.71 TPM:2.28
1768 A_TrvaMG_comp12160_c0_seq1
443bp
alpha-crystallin_[Galleria_mellonella]
FPKM:1.59 TPM:1.34
1769 A_TrvaMG_comp121615_c0_seq1
358bp
FPKM:9.00 TPM:7.58
1770 A_TrvaMG_comp12161_c0_seq1
868bp
twist_protein_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0014029 P neural crest formation
GO:0030154 P cell differentiation
GO:0046983 F protein dimerization activity
FPKM:1.07 TPM:0.90
previous next from show/37360

- SilkBase 1999-2023 -