SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/38954
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1471 A_ErmoMG_comp17368_c0_seq2
789bp
PREDICTED:_neurexin-4_isoform_X2_[Bombyx_mori]
GO:0003015 P heart process
GO:0004888 F transmembrane signaling receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005918 C septate junction
GO:0005919 C pleated septate junction
GO:0007155 P cell adhesion
GO:0007163 P establishment or maintenance of cell polarity
GO:0007165 P signal transduction
GO:0007391 P dorsal closure
GO:0008039 P synaptic target recognition
GO:0008065 P establishment of blood-nerve barrier
GO:0008104 P protein localization
GO:0008366 P axon ensheathment
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0019991 P septate junction assembly
GO:0021682 P nerve maturation
GO:0030054 C cell junction
GO:0035151 P regulation of tube size, open tracheal system
GO:0045216 P cell-cell junction organization
GO:0048786 C presynaptic active zone
GO:0060857 P establishment of glial blood-brain barrier
GO:0061343 P cell adhesion involved in heart morphogenesis
GO:0072553 P terminal button organization
GO:0097105 P presynaptic membrane assembly
FPKM:1.54 TPM:1.14
1472 A_ErmoMG_comp17371_c0_seq1
608bp
FPKM:1.92 TPM:1.41
1473 A_ErmoMG_comp17372_c0_seq1
366bp
PREDICTED:_zinc_finger_protein_596-like_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.01 TPM:0.74
1474 A_ErmoMG_comp17372_c0_seq2
543bp
PREDICTED:_zinc_finger_protein_490-like,_partial_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.03 TPM:1.50
1475 A_ErmoMG_comp17373_c0_seq1
603bp
FPKM:2.18 TPM:1.60
1476 A_ErmoMG_comp17379_c0_seq1
539bp
PREDICTED:_uncharacterized_protein_LOC105395558,_partial_[Plutella_xylostella]
FPKM:2.05 TPM:1.51
1477 A_ErmoMG_comp17379_c0_seq2
515bp
PREDICTED:_uncharacterized_protein_LOC105395558,_partial_[Plutella_xylostella]
FPKM:0.61 TPM:0.45
1478 A_ErmoMG_comp17380_c0_seq1
219bp
SJCHGC05927_protein_[Schistosoma_japonicum]
FPKM:3.79 TPM:2.79
1479 A_ErmoMG_comp17382_c0_seq1
716bp
hypothetical_protein_PHALS_09052_[Plasmopara_halstedii]
FPKM:1.82 TPM:1.34
1480 A_ErmoMG_comp173835_c0_seq1
1017bp
PREDICTED:_integral_membrane_protein_GPR155_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005622 C intracellular anatomical structure
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035556 P intracellular signal transduction
GO:0050890 P cognition
GO:0055085 P transmembrane transport
GO:0070062 C extracellular exosome
FPKM:2.64 TPM:1.94
1481 A_ErmoMG_comp17383_c0_seq1
219bp
PREDICTED:_uncharacterized_protein_LOC101739897_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000781 C chromosome, telomeric region
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006334 P nucleosome assembly
GO:0006336 P DNA replication-independent chromatin assembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0010571 P positive regulation of nuclear cell cycle DNA replication
GO:0016568 P chromatin organization
GO:0016605 C PML body
GO:0016787 F hydrolase activity
GO:0030330 P DNA damage response, signal transduction by p53 class mediator
GO:0031297 P replication fork processing
GO:0031933 C obsolete telomeric heterochromatin
GO:0032206 P positive regulation of telomere maintenance
GO:0042393 F histone binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0070603 C SWI/SNF superfamily-type complex
GO:0072711 P cellular response to hydroxyurea
GO:1901581 P negative regulation of telomeric RNA transcription from RNA pol II promoter
FPKM:2.84 TPM:2.09
1482 A_ErmoMG_comp17384_c0_seq1
477bp
PREDICTED:_uncharacterized_protein_LOC106715234_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
FPKM:2.55 TPM:1.88
1483 A_ErmoMG_comp17385_c0_seq1
379bp
FPKM:2.19 TPM:1.61
1484 A_ErmoMG_comp17386_c0_seq1
328bp
FPKM:3.19 TPM:2.35
1485 A_ErmoMG_comp17388_c0_seq1
737bp
FPKM:2.19 TPM:1.61
1486 A_ErmoMG_comp17389_c0_seq1
242bp
FPKM:4.42 TPM:3.25
1487 A_ErmoMG_comp17390_c0_seq1
201bp
PREDICTED:_myb/SANT-like_DNA-binding_domain-containing_protein_3_[Plutella_xylostella]
FPKM:3.65 TPM:2.69
1488 A_ErmoMG_comp17392_c0_seq1
373bp
FPKM:2.41 TPM:1.77
1489 A_ErmoMG_comp17394_c0_seq1
322bp
FPKM:2.26 TPM:1.67
1490 A_ErmoMG_comp17396_c0_seq1
309bp
hypothetical_protein_[Photobacterium_angustum]
FPKM:1.77 TPM:1.31
1491 A_ErmoMG_comp17397_c0_seq1
256bp
FPKM:3.56 TPM:2.62
1492 A_ErmoMG_comp17398_c0_seq1
216bp
FPKM:4.92 TPM:3.62
1493 A_ErmoMG_comp17399_c0_seq1
777bp
PREDICTED:_probable_tRNA_N6-adenosine_threonylcarbamoyltransferase,_mitochondrial_[Amyelois_transitella]
GO:0000408 C EKC/KEOPS complex
GO:0002949 P tRNA threonylcarbamoyladenosine modification
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0006508 P proteolysis
GO:0008033 P tRNA processing
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0046872 F metal ion binding
GO:0061711 F N(6)-L-threonylcarbamoyladenine synthase activity
FPKM:2.05 TPM:1.51
1494 A_ErmoMG_comp17401_c0_seq1
254bp
PREDICTED:_green-sensitive_opsin-like_[Biomphalaria_glabrata]
FPKM:2.30 TPM:1.70
1495 A_ErmoMG_comp17402_c0_seq1
268bp
FPKM:3.22 TPM:2.37
1496 A_ErmoMG_comp17403_c0_seq1
291bp
PREDICTED:_CDK5RAP1-like_protein_[Amyelois_transitella]
GO:0000079 P regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0003674 F molecular_function
GO:0003824 F catalytic activity
GO:0005575 C cellular_component
GO:0009451 P RNA modification
GO:0016740 F transferase activity
GO:0019887 F protein kinase regulator activity
GO:0035596 F methylthiotransferase activity
GO:0035600 P tRNA methylthiolation
GO:0043412 P macromolecule modification
GO:0045859 P regulation of protein kinase activity
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
FPKM:2.98 TPM:2.19
1497 A_ErmoMG_comp17404_c0_seq1
323bp
hypothetical_protein_[Methylotenera_sp._N17]
FPKM:3.07 TPM:2.26
1498 A_ErmoMG_comp174058_c0_seq1
672bp
PREDICTED:_uncharacterized_protein_LOC101742101_[Bombyx_mori]
FPKM:4.50 TPM:3.31
1499 A_ErmoMG_comp174066_c0_seq1
256bp
FPKM:5.82 TPM:4.28
1500 A_ErmoMG_comp17406_c0_seq1
473bp
PREDICTED:_putative_methyltransferase_C9orf114_[Amyelois_transitella]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0005575 C cellular_component
GO:0005694 C chromosome
GO:0007049 P cell cycle
GO:0008150 P biological_process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0044822 F RNA binding
GO:0051301 P cell division
FPKM:3.03 TPM:2.23
previous next from show/38954

- SilkBase 1999-2023 -