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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1441 A_ErmoMG_comp17335_c1_seq1
620bp
PREDICTED:_polypyrimidine_tract-binding_protein_3-like,_partial_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0021510 P spinal cord development
GO:0021549 P cerebellum development
GO:0030426 C growth cone
GO:0033119 P negative regulation of RNA splicing
GO:0036002 F pre-mRNA binding
GO:0043025 C neuronal cell body
GO:0044822 F RNA binding
GO:2000177 P regulation of neural precursor cell proliferation
FPKM:2.02 TPM:1.49
1442 A_ErmoMG_comp17336_c0_seq1
283bp
PREDICTED:_nucleolar_protein_10_[Bombyx_mori]
FPKM:2.36 TPM:1.74
1443 A_ErmoMG_comp17337_c0_seq1
643bp
PREDICTED:_nucleoprotein_TPR_[Bombyx_mori]
GO:0000022 P mitotic spindle elongation
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0003677 F DNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005652 C nuclear lamina
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005719 C euchromatin
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006325 P chromatin organization
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007094 P mitotic spindle assembly checkpoint signaling
GO:0007346 P regulation of mitotic cell cycle
GO:0009408 P response to heat
GO:0010965 P regulation of mitotic sister chromatid separation
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0016568 P chromatin organization
GO:0030496 C midbody
GO:0031490 F chromatin DNA binding
GO:0031965 C nuclear membrane
GO:0032888 P regulation of mitotic spindle elongation
GO:0034399 C nuclear periphery
GO:0034401 P obsolete chromatin organization involved in regulation of transcription
GO:0034976 P response to endoplasmic reticulum stress
GO:0042405 C nuclear inclusion body
GO:0043021 F ribonucleoprotein complex binding
GO:0045840 P positive regulation of mitotic nuclear division
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051028 P mRNA transport
GO:0051225 P spindle assembly
GO:0051233 C spindle midzone
GO:0051301 P cell division
GO:0051781 P positive regulation of cell division
GO:0051983 P regulation of chromosome segregation
GO:0060236 P regulation of mitotic spindle organization
GO:0070090 C metaphase plate
GO:0072686 C mitotic spindle
GO:0090235 P regulation of metaphase plate congression
GO:0090267 P positive regulation of mitotic cell cycle spindle assembly checkpoint
GO:0090316 P positive regulation of intracellular protein transport
GO:1901673 P regulation of mitotic spindle assembly
GO:1990047 C spindle matrix
FPKM:1.93 TPM:1.42
1444 A_ErmoMG_comp173391_c0_seq1
832bp
PREDICTED:_repressor_of_RNA_polymerase_III_transcription_MAF1_homolog_[Amyelois_transitella]
GO:0000994 F RNA polymerase III core binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016480 P negative regulation of transcription by RNA polymerase III
GO:0070217 P transcription factor TFIIIB complex assembly
FPKM:2.75 TPM:2.03
1445 A_ErmoMG_comp17339_c0_seq1
586bp
FPKM:2.01 TPM:1.48
1446 A_ErmoMG_comp173405_c0_seq1
330bp
Retinol_dehydrogenase_8_[Valsa_mali_var._pyri]
FPKM:2.37 TPM:1.74
1447 A_ErmoMG_comp17340_c0_seq1
513bp
FPKM:2.00 TPM:1.48
1448 A_ErmoMG_comp173420_c0_seq1
431bp
FPKM:2.06 TPM:1.51
1449 A_ErmoMG_comp17342_c0_seq1
611bp
FPKM:1.67 TPM:1.23
1450 A_ErmoMG_comp17343_c0_seq1
622bp
PREDICTED:_phospholipase_A-2-activating_protein-like_[Papilio_machaon]
GO:0006954 P inflammatory response
GO:0016005 F phospholipase A2 activator activity
GO:0043085 P positive regulation of catalytic activity
GO:0070062 C extracellular exosome
FPKM:2.48 TPM:1.83
1451 A_ErmoMG_comp17346_c0_seq1
461bp
FPKM:2.10 TPM:1.54
1452 A_ErmoMG_comp17347_c0_seq1
279bp
PREDICTED:_vacuolar_protein_sorting-associated_protein_8_homolog_[Bombyx_mori]
FPKM:4.05 TPM:2.98
1453 A_ErmoMG_comp17350_c0_seq1
315bp
FPKM:2.57 TPM:1.89
1454 A_ErmoMG_comp17351_c0_seq1
341bp
hypothetical_protein_TRIADDRAFT_57210_[Trichoplax_adhaerens]
FPKM:2.42 TPM:1.78
1455 A_ErmoMG_comp17352_c0_seq1
312bp
hypothetical_protein_BRADI_1g62572_[Brachypodium_distachyon]
FPKM:2.18 TPM:1.60
1456 A_ErmoMG_comp17352_c1_seq1
253bp
FPKM:2.66 TPM:1.95
1457 A_ErmoMG_comp17353_c0_seq1
250bp
PREDICTED:_dnaJ_homolog_dnj-5_isoform_X2_[Bombyx_mori]
FPKM:3.41 TPM:2.51
1458 A_ErmoMG_comp17354_c0_seq1
282bp
unknown_[Picea_sitchensis]
FPKM:3.17 TPM:2.33
1459 A_ErmoMG_comp17355_c0_seq1
237bp
gustatory_receptor_45_[Bombyx_mori]
FPKM:4.64 TPM:3.42
1460 A_ErmoMG_comp17356_c0_seq1
303bp
PREDICTED:_uncharacterized_protein_LOC106137189_isoform_X1_[Amyelois_transitella]
FPKM:3.22 TPM:2.37
1461 A_ErmoMG_comp17358_c0_seq1
275bp
FPKM:1.67 TPM:1.23
1462 A_ErmoMG_comp17359_c0_seq1
320bp
PREDICTED:_elongation_factor_Tu_GTP-binding_domain-containing_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0006412 P translation
GO:0008152 P metabolic process
GO:0042254 P ribosome biogenesis
GO:0042256 P mature ribosome assembly
GO:0043022 F ribosome binding
FPKM:2.50 TPM:1.84
1463 A_ErmoMG_comp173613_c0_seq1
1179bp
FPKM:3.02 TPM:2.22
1464 A_ErmoMG_comp17361_c0_seq1
608bp
FPKM:2.48 TPM:1.82
1465 A_ErmoMG_comp17361_c1_seq1
336bp
hypothetical_protein_[Moritella_marina]
FPKM:3.25 TPM:2.39
1466 A_ErmoMG_comp17362_c0_seq1
279bp
FPKM:1.89 TPM:1.39
1467 A_ErmoMG_comp17363_c0_seq1
380bp
FPKM:2.50 TPM:1.84
1468 A_ErmoMG_comp17365_c0_seq1
217bp
FPKM:2.92 TPM:2.15
1469 A_ErmoMG_comp17366_c0_seq1
239bp
FPKM:3.03 TPM:2.23
1470 A_ErmoMG_comp17368_c0_seq1
1058bp
PREDICTED:_neurexin-4_isoform_X2_[Bombyx_mori]
GO:0003015 P heart process
GO:0004888 F transmembrane signaling receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005918 C septate junction
GO:0005919 C pleated septate junction
GO:0007155 P cell adhesion
GO:0007163 P establishment or maintenance of cell polarity
GO:0007165 P signal transduction
GO:0007391 P dorsal closure
GO:0008039 P synaptic target recognition
GO:0008065 P establishment of blood-nerve barrier
GO:0008104 P protein localization
GO:0008366 P axon ensheathment
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0019991 P septate junction assembly
GO:0021682 P nerve maturation
GO:0030054 C cell junction
GO:0035151 P regulation of tube size, open tracheal system
GO:0045216 P cell-cell junction organization
GO:0048786 C presynaptic active zone
GO:0060857 P establishment of glial blood-brain barrier
GO:0061343 P cell adhesion involved in heart morphogenesis
GO:0072553 P terminal button organization
GO:0097105 P presynaptic membrane assembly
FPKM:0.82 TPM:0.60
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