SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp104710_c0_seq1
Scaffold_idBomo_Chr4
NCBI non-redundant
(nr)		PREDICTED:_transformation/transcription_domain-associated_protein_[Bombyx_mori]
Ontology
GO:0000125 C SAGA complex
GO:0000812 C Swr1 complex
GO:0003712 F transcription coregulator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005794 C Golgi apparatus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016578 P histone deubiquitination
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030914 C SAGA complex
GO:0033276 C transcription factor TFTC complex
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
GO:1904837 P beta-catenin-TCF complex assembly
Transcript
Level		FPKM:3.12 TPM:3.14
ORF EntryO_BomoSK28711_complete:A_BomoSK_comp104710_c0_seq1
Sequence
(Nucleotide)
GCACGGGCGGCACGTCGGGCGCGGGCGCGCTGCTGGGGCCGCTCATGATGCTGAAGGCGT
GCTGCTCCTCCAGCCCCGCCTACATCGACCGCCTGCTGCTCCCGCTCATGCGCGTCCTGC
AGCGCATGGCTAGGGACCACGTCGCCACCAACCCCGATGCAGCCATATCCGATTTGTTGA
TATTGGCCTTAGACTTGCTAAAGGCTCGCGTTTCCGTGATGCCGGGCGATACGAAAAAAA
CCTTCATAGGAACTGTTCTAGTTGGTCTTATCGAAAAGACTACAGATTCTAAGGTAATGA
AAGCGATCATTCGTATGGTTGAGGAGTGGGTGATGCACCGCGGCGCGACCACTAGCAGCG
GGGCCGTACCTTCCCTGCGCGAAAAGTCAATACTGCTCGTGAAACTAATGCAATATGTCG
AGAAACGTTTCCCTGACGACCTCGAGCTCAATGCTCAATTTTTAGAACTGATCAACTACG
TGTATCGGGATGAACAGCTGAAGGTGACGGAACTATCCATGAAGTTGGAGCCCGCTTTCC
TGGCGGGTCTCCGTTGCCCGCAGCCACAGATCCGCGCCAAGTTCTTTGAGGTGTACGACC
AGAGCGTGCGGCGGCGCGTGTTCGACCGCCTGCTGTACGTCGTGTGCTCGCAGAACTGGG
AGCACATAGGACAACACTTCTGGATTAAACAGTGCCTCGAACTGCTATTGGTCACCTGTG
CGCCCAGCACTCAAATTCGTCTATCGAATCCAAAATACTTGTTGCCGAGCATATCATCGG
TCATCAATCAAGCGGATAGCGAGGACCGAAAGTCATTCATCATCTTTAGCAGCGTTAAAG
AAGAATCATCCGACGGATTTAGCGATTCCCTCGATCCCGACAAGGAGGACGTGCTGGATA
TGGATTTAGACGCGAGTTCCACTCATAAAGAAGATTTCACTAAGAATGTTCCAAACAGAC
AGCGATCGCTAAACCAGATAGTGGCAAAGCAATCGGAGTTCCTGGAACTGGCGCGTCGCG
TCCGCGCCGAGCAGCTGCTGGCGGCCTCCGCGCAGCTCTGCCACATGGACGACACGCTCG
CGCACCACGTGTGGCTCGCCCTGCTGCCCGCGCTCTGGGCCACGCTCGACGAACGACAGC
TCACGACGCTGATCAACGAGGTTGTTCCTTTCATCATATCTGGCGTGCACGTGATTCAAC
GCGATCAGCCCGTCAGCGCCCTCAACACGTTCATAGAATCCCTCGCTCGATGTAATCCTC
CCATCAGCATCAAACCCCCTATGATGAAGTATTTGGGAAAAACGCACAACCTCTGGCATC
GTATGACACTGAATCTCGAGCAGATGGCCATCGAGCAGGCCGGCGGGCGGGTTCAAAGGG
ACCAAGCAGAAATATATGATTACGACGTAGAAGTGACGACGCCGACTGAAATTTTAGATT
CACTCAGCGATATGTATGAGTTATTACAAGAAGAGGATATGTGGTCTGGTCTTTGGCAGA
AGCATTCAAGGTACCGCGAAACTAATATCGCAATCGCCTATGAACAACAAGGCTTCTTCG
AACAAGCTCAAGCTGCATACGACGTCGCTATGGCCAAGCTGAAACAAGACTATGCGACAA
ACCCATCCTCTTACAGCATGCACAAAGAGTGCACTATTTGGACCCAACATTGGCTGAAGT
GTGCCAAAGAGTTAAACCAATGGGACTCTTTACTTGAGTTAGGACTAAGCAGAAGCGGTC
GCGATCCATTCTTGATTCTGGAAAGTTCATGGCGTAACCCTAACTGGACTACAATGAAAG
AAGCTTTAGCTGAAGTCGAATACAATTGCCCTAAGGAATTGGCGTGGGTAGTAAACCTGT
ACCGCGGGTACCTGTGCATATGCGCGGGCGGCGCCGAGCAGCTGGGCGGCGTGAGG
(1916 bp)

- SilkBase 1999-2023 -