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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
61 A_BomoSK_comp10021_c2_seq1
368bp
FPKM:0.62 TPM:0.63
62 A_BomoSK_comp100220_c0_seq1
641bp
FPKM:4.10 TPM:4.12
63 A_BomoSK_comp10022_c0_seq1
805bp
 PREDICTED:_axin_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006909 P phagocytosis
GO:0007275 P multicellular organism development
GO:0007447 P imaginal disc pattern formation
GO:0007455 P eye-antennal disc morphogenesis
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007507 P heart development
GO:0008013 F beta-catenin binding
GO:0010941 P regulation of cell death
GO:0016055 P Wnt signaling pathway
GO:0019901 F protein kinase binding
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0035019 P somatic stem cell population maintenance
GO:0042594 P response to starvation
GO:0043547 P positive regulation of GTPase activity
GO:0048477 P oogenesis
FPKM:0.55 TPM:0.55
64 A_BomoSK_comp10022_c0_seq2
1069bp
 PREDICTED:_axin_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006909 P phagocytosis
GO:0007275 P multicellular organism development
GO:0007447 P imaginal disc pattern formation
GO:0007455 P eye-antennal disc morphogenesis
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007507 P heart development
GO:0008013 F beta-catenin binding
GO:0010941 P regulation of cell death
GO:0016055 P Wnt signaling pathway
GO:0019901 F protein kinase binding
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0035019 P somatic stem cell population maintenance
GO:0042594 P response to starvation
GO:0043547 P positive regulation of GTPase activity
GO:0048477 P oogenesis
FPKM:2.17 TPM:2.18
65 A_BomoSK_comp10023_c0_seq1
425bp
 PREDICTED:_uncharacterized_protein_LOC105841647_[Bombyx_mori]
FPKM:3.09 TPM:3.10
66 A_BomoSK_comp10024_c0_seq1
929bp
FPKM:7.20 TPM:7.25
67 A_BomoSK_comp10025_c0_seq1
2823bp
 PREDICTED:_putative_zinc_finger_protein_840_isoform_X1_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0046872 F metal ion binding
FPKM:2.06 TPM:2.07
68 A_BomoSK_comp10025_c0_seq2
2358bp
 PREDICTED:_putative_zinc_finger_protein_840_isoform_X1_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0046872 F metal ion binding
FPKM:0.60 TPM:0.60
69 A_BomoSK_comp10025_c1_seq1
377bp
 Zinc_finger_protein_646_[Papilio_xuthus]
FPKM:3.27 TPM:3.29
70 A_BomoSK_comp10026_c0_seq1
844bp
 PREDICTED:_uncharacterized_protein_LOC105841711_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.20 TPM:1.21
71 A_BomoSK_comp100270_c0_seq1
559bp
 hypothetical_protein_KGM_07832_[Danaus_plexippus]
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0007293 P germarium-derived egg chamber formation
GO:0007294 P germarium-derived oocyte fate determination
GO:0007309 P oocyte axis specification
GO:0007310 P oocyte dorsal/ventral axis specification
GO:0007312 P oocyte nucleus migration involved in oocyte dorsal/ventral axis specification
GO:0007314 P oocyte anterior/posterior axis specification
GO:0008103 P oocyte microtubule cytoskeleton polarization
GO:0008298 P intracellular mRNA localization
GO:0016325 P oocyte microtubule cytoskeleton organization
GO:0017137 F small GTPase binding
GO:0019233 P sensory perception of pain
GO:0030100 P regulation of endocytosis
GO:0030154 P cell differentiation
GO:0030669 C clathrin-coated endocytic vesicle membrane
GO:0030727 P germarium-derived female germ-line cyst formation
GO:0032050 F clathrin heavy chain binding
GO:0045502 F dynein complex binding
GO:0048477 P oogenesis
GO:0048488 P synaptic vesicle endocytosis
GO:0050658 P RNA transport
GO:0051028 P mRNA transport
GO:0070727 P cellular macromolecule localization
GO:2000302 P positive regulation of synaptic vesicle exocytosis
GO:2000370 P positive regulation of clathrin-dependent endocytosis
FPKM:5.15 TPM:5.18
72 A_BomoSK_comp10027_c0_seq1
216bp
FPKM:2.87 TPM:2.89
73 A_BomoSK_comp1002803_c0_seq1
271bp
 unnamed_protein_product_[Homo_sapiens]
FPKM:1.30 TPM:1.31
74 A_BomoSK_comp10029_c0_seq1
258bp
 dNA-binding_helix-turn-helix_protein_[Clostridium_sp._CAG:533]
FPKM:0.75 TPM:0.76
75 A_BomoSK_comp100300_c0_seq1
1688bp
 PREDICTED:_protein_vav_isoform_X3_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0007015 P actin filament organization
GO:0007155 P cell adhesion
GO:0007391 P dorsal closure
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007417 P central nervous system development
GO:0007424 P open tracheal system development
GO:0007520 P myoblast fusion
GO:0008360 P regulation of cell shape
GO:0016477 P cell migration
GO:0030676 F guanyl-nucleotide exchange factor activity
GO:0031532 P actin cytoskeleton reorganization
GO:0035011 P melanotic encapsulation of foreign target
GO:0035023 P regulation of Rho protein signal transduction
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
GO:0072499 P photoreceptor cell axon guidance
GO:0090630 P activation of GTPase activity
FPKM:2.13 TPM:2.15
76 A_BomoSK_comp10030_c0_seq1
2318bp
 PREDICTED:_solute_carrier_family_22_member_13-like_[Papilio_xuthus]
GO:0005215 F transporter activity
GO:0005887 C integral component of plasma membrane
GO:0015747 P urate transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0070062 C extracellular exosome
GO:0090416 F nicotinate transmembrane transporter activity
GO:2001142 P nicotinate transport
FPKM:3.74 TPM:3.77
77 A_BomoSK_comp100310_c0_seq1
1028bp
 PREDICTED:_uncharacterized_protein_LOC101740446_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003746 F translation elongation factor activity
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0006414 P translational elongation
GO:0008152 P metabolic process
GO:0043231 C intracellular membrane-bounded organelle
FPKM:5.28 TPM:5.32
78 A_BomoSK_comp100319_c0_seq1
222bp
FPKM:2.57 TPM:2.58
79 A_BomoSK_comp10031_c0_seq1
855bp
FPKM:6.96 TPM:7.00
80 A_BomoSK_comp10031_c0_seq2
815bp
FPKM:2.90 TPM:2.92
81 A_BomoSK_comp100322_c0_seq1
1766bp
 PREDICTED:_exocyst_complex_component_4_[Bombyx_mori]
GO:0000145 C exocyst
GO:0000916 P actomyosin contractile ring contraction
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0006904 P vesicle docking involved in exocytosis
GO:0007009 P plasma membrane organization
GO:0007110 P meiosis I cytokinesis
GO:0007111 P meiosis II cytokinesis
GO:0007269 P neurotransmitter secretion
GO:0007286 P spermatid development
GO:0007298 P border follicle cell migration
GO:0009925 C basal plasma membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016028 C rhabdomere
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0016192 P vesicle-mediated transport
GO:0016324 C apical plasma membrane
GO:0050803 P regulation of synapse structure or activity
GO:0090522 P vesicle tethering involved in exocytosis
GO:0098793 C presynapse
FPKM:4.09 TPM:4.12
82 A_BomoSK_comp100326_c0_seq1
479bp
FPKM:2.71 TPM:2.72
83 A_BomoSK_comp10032_c0_seq1
769bp
 PREDICTED:_odorant_receptor_4-like_[Bombyx_mori]
FPKM:2.23 TPM:2.24
84 A_BomoSK_comp10032_c0_seq2
243bp
 PREDICTED:_odorant_receptor_4-like_[Bombyx_mori]
FPKM:0.00 TPM:0.00
85 A_BomoSK_comp100345_c0_seq1
402bp
 repressor_[Proteus_vulgaris]
FPKM:8.93 TPM:8.99
86 A_BomoSK_comp10034_c0_seq1
1921bp
 PREDICTED:_survival_of_motor_neuron-related-splicing_factor_30_[Papilio_machaon]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0015030 C Cajal body
GO:0016607 C nuclear speck
FPKM:8.22 TPM:8.27
87 A_BomoSK_comp1003599_c0_seq1
208bp
FPKM:1.70 TPM:1.71
88 A_BomoSK_comp10035_c0_seq1
1254bp
 PREDICTED:_chromatin_assembly_factor_1_subunit_A_[Bombyx_mori]
FPKM:4.16 TPM:4.19
89 A_BomoSK_comp10035_c0_seq2
1039bp
 PREDICTED:_chromatin_assembly_factor_1_subunit_A_[Bombyx_mori]
FPKM:0.00 TPM:0.00
90 A_BomoSK_comp10036_c0_seq1
995bp
 hypothetical_protein_KGM_21242_[Danaus_plexippus]
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0043086 P negative regulation of catalytic activity
GO:0044822 F RNA binding
GO:0050999 P regulation of nitric-oxide synthase activity
GO:0051001 P negative regulation of nitric-oxide synthase activity
GO:0071013 C catalytic step 2 spliceosome
FPKM:8.14 TPM:8.19
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