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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
541 A_BomoSK_comp10260_c0_seq1
2823bp
FPKM:4.69 TPM:4.71
542 A_BomoSK_comp10261_c0_seq1
1493bp
FPKM:2.98 TPM:2.99
543 A_BomoSK_comp10262_c0_seq1
4622bp
 PREDICTED:_uncharacterized_protein_LOC101738218_[Bombyx_mori]
FPKM:3.24 TPM:3.26
544 A_BomoSK_comp102635_c0_seq1
301bp
 PREDICTED:_uncharacterized_protein_LOC106132264_[Amyelois_transitella]
FPKM:12.25 TPM:12.32
545 A_BomoSK_comp10263_c0_seq1
3399bp
 PREDICTED:_dedicator_of_cytokinesis_protein_1_isoform_X2_[Bombyx_mori]
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006909 P phagocytosis
GO:0006915 P apoptotic process
GO:0007010 P cytoskeleton organization
GO:0007264 P small GTPase mediated signal transduction
GO:0016020 C membrane
GO:0016477 P cell migration
GO:0017124 F SH3 domain binding
GO:0032045 C guanyl-nucleotide exchange factor complex
GO:0043547 P positive regulation of GTPase activity
FPKM:2.24 TPM:2.25
546 A_BomoSK_comp10263_c0_seq2
3411bp
 PREDICTED:_dedicator_of_cytokinesis_protein_1_isoform_X1_[Bombyx_mori]
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006909 P phagocytosis
GO:0006915 P apoptotic process
GO:0007010 P cytoskeleton organization
GO:0007264 P small GTPase mediated signal transduction
GO:0016020 C membrane
GO:0016477 P cell migration
GO:0017124 F SH3 domain binding
GO:0032045 C guanyl-nucleotide exchange factor complex
GO:0043547 P positive regulation of GTPase activity
FPKM:1.99 TPM:2.00
547 A_BomoSK_comp10264_c0_seq1
252bp
FPKM:0.81 TPM:0.82
548 A_BomoSK_comp10264_c1_seq1
1061bp
FPKM:2.85 TPM:2.87
549 A_BomoSK_comp10264_c1_seq2
254bp
FPKM:2.16 TPM:2.17
550 A_BomoSK_comp10265_c0_seq1
4276bp
 PREDICTED:_uncharacterized_protein_LOC101742695_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:5.08 TPM:5.11
551 A_BomoSK_comp10265_c0_seq2
5673bp
 PREDICTED:_uncharacterized_protein_LOC101742695_[Bombyx_mori]
FPKM:3.49 TPM:3.51
552 A_BomoSK_comp10266_c0_seq1
1956bp
 PREDICTED:_solute_carrier_family_25_member_40-like_isoform_X1_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:5.99 TPM:6.02
553 A_BomoSK_comp10266_c0_seq2
1787bp
 PREDICTED:_solute_carrier_family_25_member_40-like_isoform_X1_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006412 P translation
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:1.00 TPM:1.01
554 A_BomoSK_comp10267_c0_seq1
1020bp
 PREDICTED:_microtubule-associated_serine/threonine-protein_kinase_3_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0006468 P protein phosphorylation
GO:0007010 P cytoskeleton organization
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0035556 P intracellular signal transduction
FPKM:1.62 TPM:1.63
555 A_BomoSK_comp10268_c0_seq1
1000bp
FPKM:2.21 TPM:2.23
556 A_BomoSK_comp10268_c1_seq1
334bp
FPKM:0.38 TPM:0.39
557 A_BomoSK_comp10269_c0_seq1
1526bp
 Nuclear_fragile_X_mental_retardation-interacting_protein_1_[Papilio_xuthus]
GO:0000492 P box C/D snoRNP assembly
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005726 C perichromatin fibrils
GO:0005730 C nucleolus
GO:0008023 C transcription elongation factor complex
GO:0016363 C nuclear matrix
GO:0022626 C cytosolic ribosome
GO:0030515 F snoRNA binding
GO:0030674 F protein-macromolecule adaptor activity
GO:0042802 F identical protein binding
GO:0043234 C protein-containing complex
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048786 C presynaptic active zone
GO:0051117 F ATPase binding
GO:0051259 P protein complex oligomerization
GO:0070761 C pre-snoRNP complex
FPKM:6.47 TPM:6.50
558 A_BomoSK_comp102702_c0_seq1
275bp
FPKM:2.49 TPM:2.51
559 A_BomoSK_comp10270_c0_seq1
220bp
FPKM:1.58 TPM:1.59
560 A_BomoSK_comp10270_c0_seq2
2035bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_L_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0010467 P gene expression
GO:0016020 C membrane
GO:0030529 C ribonucleoprotein complex
GO:0035770 C ribonucleoprotein granule
GO:0044212 F transcription cis-regulatory region binding
GO:0044822 F RNA binding
GO:0045120 C pronucleus
GO:0070062 C extracellular exosome
GO:0097157 F pre-mRNA intronic binding
FPKM:4.37 TPM:4.40
561 A_BomoSK_comp102719_c0_seq1
268bp
FPKM:7.39 TPM:7.43
562 A_BomoSK_comp10271_c0_seq1
837bp
FPKM:5.80 TPM:5.84
563 A_BomoSK_comp10271_c0_seq2
435bp
FPKM:1.37 TPM:1.37
564 A_BomoSK_comp1027265_c0_seq1
212bp
FPKM:3.11 TPM:3.13
565 A_BomoSK_comp10272_c0_seq1
322bp
FPKM:4.58 TPM:4.61
566 A_BomoSK_comp102732_c0_seq1
741bp
FPKM:3.66 TPM:3.68
567 A_BomoSK_comp10273_c0_seq1
1046bp
 PREDICTED:_glutathione_S-transferase_epsilon_6_isoform_X1_[Bombyx_mori]
GO:0004364 F glutathione transferase activity
GO:0008152 P metabolic process
GO:0016740 F transferase activity
FPKM:5.76 TPM:5.80
568 A_BomoSK_comp102741_c0_seq1
2718bp
 PREDICTED:_uncharacterized_protein_LOC106136994_[Amyelois_transitella]
GO:0046872 F metal ion binding
FPKM:4.24 TPM:4.26
569 A_BomoSK_comp10274_c0_seq1
1656bp
 PREDICTED:_regulation_of_nuclear_pre-mRNA_domain-containing_protein_1B_[Amyelois_transitella]
GO:0000993 F RNA polymerase II complex binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008284 P positive regulation of cell population proliferation
GO:0010564 P regulation of cell cycle process
GO:0016591 C RNA polymerase II, holoenzyme
GO:0042795 P snRNA transcription by RNA polymerase II
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070940 P dephosphorylation of RNA polymerase II C-terminal domain
FPKM:4.51 TPM:4.54
570 A_BomoSK_comp10275_c0_seq1
1556bp
 PREDICTED:_chondroitin_sulfate_synthase_2_[Amyelois_transitella]
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0008376 F acetylgalactosaminyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0032580 C Golgi cisterna membrane
GO:0046872 F metal ion binding
GO:0047238 F glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510 F N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity
FPKM:6.36 TPM:6.40
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