SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoSK_comp10275_c0_seq1
Scaffold_idBomo_Chr20
NCBI non-redundant
(nr)		PREDICTED:_chondroitin_sulfate_synthase_2_[Amyelois_transitella]
Ontology
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0008376 F acetylgalactosaminyltransferase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030206 P chondroitin sulfate biosynthetic process
GO:0032580 C Golgi cisterna membrane
GO:0046872 F metal ion binding
GO:0047238 F glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity
GO:0050510 F N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity
Transcript
Level		FPKM:6.36 TPM:6.40
ORF EntryO_BomoSK6986_3prime_partial:A_BomoSK_comp10275_c0_seq1
Sequence
(Nucleotide)
CGGAAGGACAGCGAGTTTCTATTTCTCAACCTATGATTATCAGCAATATATCTTTTGGTT
TTAATGTAAAAATTATCTATGAAATCAGTTGATAAACTTCGCAAAAGCGTCGAGACGCTA
TAAATGTCTTCTAACATCCATTAAAAATACAGTAACCAGTAAAATGTTCTCGCGATGCCT
GGTGTCTCAAGTAAAACATAACTCGTACTTTTTAATAGGCCTATTAATCGGTTTGTGGGT
GTCTCTCGCTGTTATACCGTTGGATGAAGAGCCGGCGCCTTGTGTAGCGACTGTAGGCAG
TGCCTCTCCAGTTCAGGATGAATTTGTGCCGCAGCGGGAGGAAAAACCAGCTGGTTCAGG
ACAGACGGCTGGGAGAAGCGTGCAACGACCTCGTTATTACAGTACTGAGCTGGGCATGAG
AGGTTCCCTTCTCACTGGAATCCTGAGCTCGGAAGAAGCCCTCAAAGTCCAAGTGCCAGC
TCTGAACCGAACAGCAGCAAGACTGCAGCCAGCCTTAAAATTCTTCATTACCGCCAGTGC
AATGAGCACTGTACCTGGGCTAGCTAATGTTGTTGGCTTCACAGATACTAGGGAAATGCT
AAAACCATTTCATGCCTTGAAGTACTTAGCAGATAATTATTTAGAGGAGTACGATTTCTT
CTTCATTGTATCCGACACAGCCTTTGTGAATGCAAGACGGTTGACCCAGCTGGTCTCTCA
GTTGTCTGTCAGCCAAGATGTGTACATGGGGAGGGTAGCTGATGATGAAAGTCATTATTG
TTCTTTAGACAATGGAATAATCCTTTCTAACTCTGTGCTCCGCGCTATCCACAGTGAACT
CGACTGGTGTGTACGCAATTCATATTCTCCTCACCACTACGAGAATATAGGTCGTTGTGT
GTTACACTCTGCTCATTTGTCTTGCAACCCTGACGTACAGGGTGAACACTACTCATCAGT
AGTTATCGAAAATGATCAACTACCATTAACTGAGTCTTTGGCTGATGCTGTAACAGTGTA
TCCCATCATGGACACTCACAGGTTCTACGAGATACACGCTTACATATCACGGGTGTTTTT
GGAACGCGACCACGAGGAGGTGCTGAAACTACGCAGCTACATGTGGCACAACTCCGCGCG
CCACCCCCCCGGGTACAGGAACAGCACGTGGCCCGCCGGCCTCAGGGACGATCCCGGACT
GGCCAGACCTTTACCGGGGAACAGGTTCGACCACCTCCGCTGGACGGCAATTAACGGGAC
CCACGCGTTCTTTCCTGACGACCACCACAATGTATTACCGATCACCGGAGCTTACAGAGA
AGCCTTGGATCTGGTGCTCACCCAAGTGAGGGCGTGGTCGCTGCACCGCTGGCCCGAGGC
GCTGGACGTGCAGCTGGTGGAGGGGGCCTGGAAGTGGGAGCCGGCCGTCGCGCTGCGGTA
CCGCCTCCTGCTCCGCCTCACCGCCAAGGAGGACAAGGACACGCACATGAGCAGGCTGGT
GGAGGCGGTGCGTCCGCTGGGCGCGGCGCGGCTGGTGCCGGTGCGCTACGTGACGG
(1556 bp)

- SilkBase 1999-2023 -