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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
421 A_BomoSK_comp1019_c0_seq2
601bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC105259517_[Camponotus_floridanus]
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006310 P DNA recombination
GO:0015074 P DNA integration
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.36 TPM:1.37
422 A_BomoSK_comp101_c0_seq1
225bp
FPKM:0.00 TPM:0.00
423 A_BomoSK_comp10201_c0_seq1
780bp
FPKM:1.61 TPM:1.62
424 A_BomoSK_comp10202_c0_seq1
1008bp
FPKM:5.00 TPM:5.03
425 A_BomoSK_comp10202_c0_seq2
326bp
 repressor_[Pantoea_agglomerans]
FPKM:1.21 TPM:1.22
426 A_BomoSK_comp102039_c0_seq1
819bp
 PREDICTED:_out_at_first_protein_[Papilio_machaon]
GO:0007275 P multicellular organism development
FPKM:5.26 TPM:5.29
427 A_BomoSK_comp10203_c0_seq1
1961bp
 PREDICTED:_probable_RNA-binding_protein_CG14230_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005575 C cellular_component
GO:0022008 P neurogenesis
FPKM:7.35 TPM:7.39
428 A_BomoSK_comp10203_c0_seq2
1847bp
 PREDICTED:_probable_RNA-binding_protein_CG14230_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005575 C cellular_component
GO:0022008 P neurogenesis
FPKM:0.00 TPM:0.00
429 A_BomoSK_comp10204_c0_seq1
556bp
 PREDICTED:_acylphosphatase-2_isoform_X1_[Amyelois_transitella]
GO:0003998 F acylphosphatase activity
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0006796 P phosphate-containing compound metabolic process
GO:0016787 F hydrolase activity
FPKM:6.58 TPM:6.62
430 A_BomoSK_comp10204_c0_seq2
455bp
 PREDICTED:_acylphosphatase-2_isoform_X1_[Amyelois_transitella]
GO:0003998 F acylphosphatase activity
GO:0005739 C mitochondrion
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
FPKM:0.41 TPM:0.41
431 A_BomoSK_comp10205_c0_seq1
1018bp
 PREDICTED:_ATP-dependent_RNA_helicase_DHX8_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:5.66 TPM:5.69
432 A_BomoSK_comp10205_c0_seq2
948bp
 PREDICTED:_ATP-dependent_RNA_helicase_DHX8_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
FPKM:2.92 TPM:2.93
433 A_BomoSK_comp10206_c0_seq1
292bp
FPKM:0.00 TPM:0.00
434 A_BomoSK_comp10206_c0_seq2
880bp
FPKM:4.87 TPM:4.90
435 A_BomoSK_comp10207_c0_seq1
489bp
 PREDICTED:_paraplegin_[Linepithema_humile]
FPKM:2.62 TPM:2.63
436 A_BomoSK_comp102086_c0_seq1
609bp
 PREDICTED:_myotubularin-related_protein_5_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0016020 C membrane
GO:0019208 F phosphatase regulator activity
GO:0043087 P regulation of GTPase activity
GO:0043547 P positive regulation of GTPase activity
FPKM:6.28 TPM:6.31
437 A_BomoSK_comp10208_c0_seq1
1886bp
 PREDICTED:_uncharacterized_protein_PFB0145c-like_[Bombyx_mori]
FPKM:4.53 TPM:4.56
438 A_BomoSK_comp10209_c0_seq1
272bp
FPKM:3.58 TPM:3.60
439 A_BomoSK_comp10209_c0_seq2
1044bp
 PREDICTED:_pre-mRNA-splicing_factor_SPF27_[Papilio_polytes]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030054 C cell junction
GO:0071011 C precatalytic spliceosome
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:9.06 TPM:9.11
440 A_BomoSK_comp10209_c0_seq3
981bp
 PREDICTED:_pre-mRNA-splicing_factor_SPF27_[Papilio_polytes]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030054 C cell junction
GO:0071011 C precatalytic spliceosome
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:12.29 TPM:12.36
441 A_BomoSK_comp1021086_c0_seq1
221bp
FPKM:1.31 TPM:1.31
442 A_BomoSK_comp10210_c0_seq1
2728bp
 PREDICTED:_uncharacterized_protein_LOC106711857_[Papilio_machaon]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007275 P multicellular organism development
GO:0007281 P germ cell development
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
GO:0030529 C ribonucleoprotein complex
GO:0031047 P gene silencing by RNA
GO:0033391 C chromatoid body
GO:0034587 P piRNA metabolic process
GO:0043046 P DNA methylation involved in gamete generation
GO:0043186 C P granule
GO:0046872 F metal ion binding
GO:0051321 P meiotic cell cycle
GO:0071546 C pi-body
FPKM:6.63 TPM:6.67
443 A_BomoSK_comp10211_c0_seq1
1812bp
 PREDICTED:_solute_carrier_organic_anion_transporter_family_member_2A1-like_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006857 P oligopeptide transport
GO:0008514 F organic anion transmembrane transporter activity
GO:0009925 C basal plasma membrane
GO:0009986 C cell surface
GO:0015198 F oligopeptide transmembrane transporter activity
GO:0015347 F sodium-independent organic anion transmembrane transporter activity
GO:0015711 P organic anion transport
GO:0015732 P prostaglandin transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0043252 P sodium-independent organic anion transport
FPKM:5.15 TPM:5.18
444 A_BomoSK_comp10211_c0_seq2
204bp
 PREDICTED:_solute_carrier_organic_anion_transporter_family_member_2A1-like_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006820 P anion transport
GO:0008206 P bile acid metabolic process
GO:0008514 F organic anion transmembrane transporter activity
GO:0015125 F bile acid transmembrane transporter activity
GO:0015347 F sodium-independent organic anion transmembrane transporter activity
GO:0015721 P bile acid and bile salt transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043252 P sodium-independent organic anion transport
FPKM:7.43 TPM:7.47
445 A_BomoSK_comp10211_c0_seq3
248bp
 PREDICTED:_solute_carrier_organic_anion_transporter_family_member_2A1-like_isoform_X1_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0008206 P bile acid metabolic process
GO:0008514 F organic anion transmembrane transporter activity
GO:0015125 F bile acid transmembrane transporter activity
GO:0015347 F sodium-independent organic anion transmembrane transporter activity
GO:0015350 F methotrexate transmembrane transporter activity
GO:0015711 P organic anion transport
GO:0015721 P bile acid and bile salt transport
GO:0015893 P xenobiotic transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043252 P sodium-independent organic anion transport
GO:0051958 P methotrexate transport
FPKM:0.00 TPM:0.00
446 A_BomoSK_comp10212_c0_seq1
1426bp
FPKM:6.26 TPM:6.30
447 A_BomoSK_comp10213_c0_seq1
867bp
FPKM:7.12 TPM:7.16
448 A_BomoSK_comp102157_c0_seq1
963bp
FPKM:4.42 TPM:4.45
449 A_BomoSK_comp10215_c0_seq1
306bp
 PREDICTED:_uncharacterized_protein_LOC105841473_[Bombyx_mori]
FPKM:0.94 TPM:0.95
450 A_BomoSK_comp10215_c0_seq2
816bp
 PREDICTED:_ATP-dependent_DNA_helicase_pfh1-like_[Nasonia_vitripennis]
GO:0000002 P mitochondrial genome maintenance
GO:0000166 F nucleotide binding
GO:0000723 P telomere maintenance
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005657 C replication fork
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0010521 F telomerase inhibitor activity
GO:0016787 F hydrolase activity
GO:0032211 P negative regulation of telomere maintenance via telomerase
GO:0032508 P DNA duplex unwinding
GO:0043141 F 5'-3' DNA helicase activity
GO:0044806 P G-quadruplex DNA unwinding
GO:0051974 P negative regulation of telomerase activity
FPKM:2.69 TPM:2.70
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