SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/43914
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
421 A_BomoMG_comp126909_c0_seq1
354bp
FPKM:6.30 TPM:4.97
422 A_BomoMG_comp126944_c0_seq1
317bp
FPKM:4.17 TPM:3.29
423 A_BomoMG_comp126970_c0_seq1
303bp
 hypothetical_protein_[Pseudanabaena_sp._PCC_6802]
FPKM:6.88 TPM:5.44
424 A_BomoMG_comp127082_c0_seq1
315bp
FPKM:7.10 TPM:5.61
425 A_BomoMG_comp127098_c0_seq1
533bp
 mitochondrial_28S_ribosomal_protein_S18c_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0022627 C cytosolic small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0070124 P mitochondrial translational initiation
GO:0070125 P mitochondrial translational elongation
FPKM:6.26 TPM:4.94
426 A_BomoMG_comp127103_c0_seq1
1813bp
FPKM:3.38 TPM:2.67
427 A_BomoMG_comp12713_c0_seq1
273bp
 PREDICTED:_uncharacterized_protein_LOC106138993_[Amyelois_transitella]
FPKM:0.89 TPM:0.70
428 A_BomoMG_comp127193_c0_seq1
699bp
FPKM:5.38 TPM:4.25
429 A_BomoMG_comp127222_c0_seq1
1950bp
 PREDICTED:_single-stranded_DNA-binding_protein_3_isoform_X1_[Bombyx_mori]
GO:0002244 P hematopoietic progenitor cell differentiation
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006461 P protein-containing complex assembly
GO:0008284 P positive regulation of cell population proliferation
GO:0021501 P prechordal plate formation
GO:0021547 P midbrain-hindbrain boundary initiation
GO:0043234 C protein-containing complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0060322 P head development
GO:0060323 P head morphogenesis
GO:2000744 P positive regulation of anterior head development
FPKM:4.01 TPM:3.17
430 A_BomoMG_comp127255_c0_seq1
1129bp
 PREDICTED:_uncharacterized_protein_LOC105841855_[Bombyx_mori]
GO:0005487 F structural constituent of nuclear pore
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0008139 F nuclear localization sequence binding
GO:0015031 P protein transport
GO:0048812 P neuron projection morphogenesis
GO:0051028 P mRNA transport
FPKM:5.10 TPM:4.03
431 A_BomoMG_comp12729_c0_seq1
229bp
 PREDICTED:_phosphatidylinositol_4,5-bisphosphate_3-kinase_catalytic_subunit_delta_isoform_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0001779 P natural killer cell differentiation
GO:0001816 P cytokine production
GO:0002250 P adaptive immune response
GO:0002376 P immune system process
GO:0002551 P mast cell chemotaxis
GO:0002679 P respiratory burst involved in defense response
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005942 C phosphatidylinositol 3-kinase complex
GO:0006468 P protein phosphorylation
GO:0006661 P phosphatidylinositol biosynthetic process
GO:0006935 P chemotaxis
GO:0006954 P inflammatory response
GO:0007165 P signal transduction
GO:0010628 P positive regulation of gene expression
GO:0010818 P T cell chemotaxis
GO:0014065 P phosphatidylinositol 3-kinase signaling
GO:0014066 P regulation of phosphatidylinositol 3-kinase signaling
GO:0016301 F kinase activity
GO:0016303 F 1-phosphatidylinositol-3-kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030101 P natural killer cell activation
GO:0030154 P cell differentiation
GO:0030217 P T cell differentiation
GO:0030335 P positive regulation of cell migration
GO:0030593 P neutrophil chemotaxis
GO:0035004 F phosphatidylinositol 3-kinase activity
GO:0035005 F 1-phosphatidylinositol-4-phosphate 3-kinase activity
GO:0035747 P natural killer cell chemotaxis
GO:0035754 P B cell chemotaxis
GO:0036092 P phosphatidylinositol-3-phosphate biosynthetic process
GO:0042110 P T cell activation
GO:0042113 P B cell activation
GO:0042629 C mast cell granule
GO:0043303 P mast cell degranulation
GO:0045087 P innate immune response
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0046934 F phosphatidylinositol-4,5-bisphosphate 3-kinase activity
GO:0048015 P phosphatidylinositol-mediated signaling
GO:0050852 P T cell receptor signaling pathway
GO:0050853 P B cell receptor signaling pathway
GO:0060374 P mast cell differentiation
GO:0072672 P neutrophil extravasation
FPKM:1.36 TPM:1.08
432 A_BomoMG_comp127309_c0_seq1
242bp
FPKM:2.75 TPM:2.17
433 A_BomoMG_comp127347_c0_seq1
245bp
FPKM:1.14 TPM:0.90
434 A_BomoMG_comp127418_c0_seq1
923bp
 PREDICTED:_phosphomevalonate_kinase_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004631 F phosphomevalonate kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005777 C peroxisome
GO:0006629 P lipid metabolic process
GO:0006694 P steroid biosynthetic process
GO:0006695 P cholesterol biosynthetic process
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0016126 P sterol biosynthetic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019287 P isopentenyl diphosphate biosynthetic process, mevalonate pathway
FPKM:4.88 TPM:3.85
435 A_BomoMG_comp127425_c0_seq1
412bp
 Heterogeneous_nuclear_ribonucleoprotein_Q_[Atta_colombica]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008380 P RNA splicing
GO:0010467 P gene expression
GO:0030425 C dendrite
GO:0030426 C growth cone
GO:0030529 C ribonucleoprotein complex
GO:0043086 P negative regulation of catalytic activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0043679 C axon terminus
GO:0044822 F RNA binding
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061157 P mRNA destabilization
GO:0071013 C catalytic step 2 spliceosome
FPKM:6.46 TPM:5.10
436 A_BomoMG_comp127475_c0_seq1
228bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_ATP-citrate_synthase-like,_partial_[Bombyx_mori]
FPKM:7.81 TPM:6.17
437 A_BomoMG_comp127582_c0_seq1
1661bp
 PREDICTED:_carboxypeptidase_E-like_[Bombyx_mori]
GO:0004180 F carboxypeptidase activity
GO:0004181 F metallocarboxypeptidase activity
GO:0004185 F serine-type carboxypeptidase activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005794 C Golgi apparatus
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030070 P insulin processing
GO:0030141 C secretory granule
GO:0030658 C transport vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0043025 C neuronal cell body
GO:0046872 F metal ion binding
GO:0097060 C synaptic membrane
FPKM:5.24 TPM:4.14
438 A_BomoMG_comp127663_c0_seq1
334bp
 MULTISPECIES:_hypothetical_protein_[Bacillus]
FPKM:8.17 TPM:6.45
439 A_BomoMG_comp127789_c0_seq1
203bp
 14-3-3_zeta,_partial_[Cotesia_vestalis]
GO:0005737 C cytoplasm
GO:0019904 F protein domain specific binding
FPKM:7.18 TPM:5.67
440 A_BomoMG_comp127924_c0_seq1
212bp
 hypothetical_protein_SPAPADRAFT_154455_[Spathaspora_passalidarum_NRRL_Y-27907]
FPKM:1.70 TPM:1.35
441 A_BomoMG_comp127991_c0_seq1
215bp
FPKM:4.35 TPM:3.44
442 A_BomoMG_comp128011_c0_seq1
321bp
FPKM:8.78 TPM:6.94
443 A_BomoMG_comp128217_c0_seq1
254bp
 MerR_family_transcriptional_regulator_[Lactobacillus_homohiochii]
FPKM:5.93 TPM:4.68
444 A_BomoMG_comp128262_c0_seq1
341bp
FPKM:3.84 TPM:3.03
445 A_BomoMG_comp128283_c0_seq1
385bp
FPKM:3.13 TPM:2.47
446 A_BomoMG_comp128292_c0_seq1
871bp
FPKM:5.79 TPM:4.58
447 A_BomoMG_comp128413_c0_seq1
239bp
 Zinc_transporter_ZIP3,_partial_[Pterocles_gutturalis]
FPKM:3.50 TPM:2.76
448 A_BomoMG_comp128441_c0_seq1
904bp
 PREDICTED:_protein_mahjong_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0016567 P protein ubiquitination
GO:0035212 P cell competition in a multicellular organism
FPKM:4.61 TPM:3.64
449 A_BomoMG_comp128754_c0_seq1
335bp
 PREDICTED:_BTB/POZ_domain-containing_protein_At3g22104_isoform_X1_[Prunus_mume]
FPKM:7.73 TPM:6.11
450 A_BomoMG_comp128773_c0_seq1
436bp
 PREDICTED:_uncharacterized_protein_LOC105842669_[Bombyx_mori]
FPKM:4.63 TPM:3.66
previous next from show/43914

- SilkBase 1999-2023 -