SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/43914
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
451 A_BomoMG_comp128789_c0_seq1
309bp
FPKM:7.36 TPM:5.82
452 A_BomoMG_comp128831_c0_seq1
289bp
FPKM:7.09 TPM:5.60
453 A_BomoMG_comp128956_c0_seq1
548bp
FPKM:2.22 TPM:1.76
454 A_BomoMG_comp129005_c0_seq1
453bp
FPKM:7.78 TPM:6.14
455 A_BomoMG_comp129096_c0_seq1
266bp
 target_of_rapamycin_isoform_2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0001030 F RNA polymerase III type 1 promoter sequence-specific DNA binding
GO:0001031 F RNA polymerase III type 2 promoter sequence-specific DNA binding
GO:0001032 F RNA polymerase III type 3 promoter sequence-specific DNA binding
GO:0001156 F TFIIIC-class transcription factor complex binding
GO:0001933 P negative regulation of protein phosphorylation
GO:0001934 P positive regulation of protein phosphorylation
GO:0001938 P positive regulation of endothelial cell proliferation
GO:0003007 P heart morphogenesis
GO:0003179 P heart valve morphogenesis
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005942 C phosphatidylinositol 3-kinase complex
GO:0005979 P regulation of glycogen biosynthetic process
GO:0006109 P regulation of carbohydrate metabolic process
GO:0006112 P energy reserve metabolic process
GO:0006207 P 'de novo' pyrimidine nucleobase biosynthetic process
GO:0006281 P DNA repair
GO:0006468 P protein phosphorylation
GO:0006950 P response to stress
GO:0007050 P regulation of cell cycle
GO:0007165 P signal transduction
GO:0007281 P germ cell development
GO:0007420 P brain development
GO:0007569 P cell aging
GO:0007584 P response to nutrient
GO:0007616 P long-term memory
GO:0008144 F obsolete drug binding
GO:0008542 P visual learning
GO:0009791 P post-embryonic development
GO:0010507 P negative regulation of autophagy
GO:0010592 P positive regulation of lamellipodium assembly
GO:0010628 P positive regulation of gene expression
GO:0010831 P positive regulation of myotube differentiation
GO:0010942 P positive regulation of cell death
GO:0010976 P positive regulation of neuron projection development
GO:0012505 C endomembrane system
GO:0014042 P positive regulation of neuron maturation
GO:0014736 P negative regulation of muscle atrophy
GO:0016020 C membrane
GO:0016049 P cell growth
GO:0016236 P macroautophagy
GO:0016242 P negative regulation of macroautophagy
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016605 C PML body
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0018105 P peptidyl-serine phosphorylation
GO:0018107 P peptidyl-threonine phosphorylation
GO:0019901 F protein kinase binding
GO:0019904 F protein domain specific binding
GO:0021510 P spinal cord development
GO:0030030 P cell projection organization
GO:0030163 P protein catabolic process
GO:0030425 C dendrite
GO:0030838 P positive regulation of actin filament polymerization
GO:0031090 C organelle membrane
GO:0031295 P T cell costimulation
GO:0031397 P negative regulation of protein ubiquitination
GO:0031529 P ruffle organization
GO:0031641 P regulation of myelination
GO:0031669 P cellular response to nutrient levels
GO:0031929 P TOR signaling
GO:0031931 C TORC1 complex
GO:0031932 C TORC2 complex
GO:0031998 P regulation of fatty acid beta-oxidation
GO:0032095 P regulation of response to food
GO:0032868 P response to insulin
GO:0032956 P regulation of actin cytoskeleton organization
GO:0032991 C protein-containing complex
GO:0035176 P social behavior
GO:0035264 P multicellular organism growth
GO:0040007 P growth
GO:0042060 P wound healing
GO:0042220 P response to cocaine
GO:0043022 F ribosome binding
GO:0043025 C neuronal cell body
GO:0043087 P regulation of GTPase activity
GO:0043200 P response to amino acid
GO:0043231 C intracellular membrane-bounded organelle
GO:0043278 P response to morphine
GO:0043610 P regulation of carbohydrate utilization
GO:0045429 P positive regulation of nitric oxide biosynthetic process
GO:0045670 P regulation of osteoclast differentiation
GO:0045727 P positive regulation of translation
GO:0045792 P negative regulation of cell size
GO:0045859 P regulation of protein kinase activity
GO:0045945 P positive regulation of transcription by RNA polymerase III
GO:0046777 P protein autophosphorylation
GO:0046889 P positive regulation of lipid biosynthetic process
GO:0048015 P phosphatidylinositol-mediated signaling
GO:0048255 P mRNA stabilization
GO:0048661 P positive regulation of smooth muscle cell proliferation
GO:0048714 P positive regulation of oligodendrocyte differentiation
GO:0048738 P cardiac muscle tissue development
GO:0050731 P positive regulation of peptidyl-tyrosine phosphorylation
GO:0050769 P positive regulation of neurogenesis
GO:0050882 P voluntary musculoskeletal movement
GO:0051219 F phosphoprotein binding
GO:0051496 P positive regulation of stress fiber assembly
GO:0051534 P negative regulation of calcineurin-NFAT signaling cascade
GO:0051896 P regulation of protein kinase B signaling
GO:0051897 P positive regulation of protein kinase B signaling
GO:0055006 P cardiac cell development
GO:0055013 P cardiac muscle cell development
GO:0060048 P cardiac muscle contraction
GO:0060135 P maternal process involved in female pregnancy
GO:0060252 P positive regulation of glial cell proliferation
GO:0060999 P positive regulation of dendritic spine development
GO:0061051 P positive regulation of cell growth involved in cardiac muscle cell development
GO:0071456 P cellular response to hypoxia
GO:0090335 P regulation of brown fat cell differentiation
GO:0090559 P regulation of membrane permeability
GO:1900034 P regulation of cellular response to heat
GO:1901216 P positive regulation of neuron death
GO:1901838 P positive regulation of transcription of nucleolar large rRNA by RNA polymerase I
GO:1904000 P positive regulation of eating behavior
GO:1904056 P positive regulation of cholangiocyte proliferation
GO:1904058 P positive regulation of sensory perception of pain
GO:1904193 P negative regulation of cholangiocyte apoptotic process
GO:1904197 P positive regulation of granulosa cell proliferation
GO:1904206 P positive regulation of skeletal muscle hypertrophy
GO:1904213 P negative regulation of iodide transmembrane transport
FPKM:5.96 TPM:4.71
456 A_BomoMG_comp129289_c0_seq1
313bp
 DNA_methyltransferase_[Oscillatoria_nigro-viridis]
FPKM:3.82 TPM:3.02
457 A_BomoMG_comp129333_c0_seq1
757bp
 RNA_polymerase_subunit_sigma-24_[[Clostridium]_clariflavum]
FPKM:5.36 TPM:4.23
458 A_BomoMG_comp129375_c0_seq1
1202bp
 PREDICTED:_aldo-keto_reductase_AKR2E4-like_[Papilio_machaon]
GO:0006629 P lipid metabolic process
GO:0008202 P steroid metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:4.71 TPM:3.72
459 A_BomoMG_comp129489_c0_seq1
406bp
 hypothetical_protein_UF64_14175_[Thalassospira_sp._HJ]
FPKM:6.75 TPM:5.33
460 A_BomoMG_comp129497_c0_seq1
230bp
 GH13807_[Drosophila_grimshawi]
FPKM:4.93 TPM:3.90
461 A_BomoMG_comp129511_c0_seq1
414bp
FPKM:5.15 TPM:4.07
462 A_BomoMG_comp129541_c0_seq1
1430bp
 PREDICTED:_BTB/POZ_domain-containing_protein_10_[Papilio_polytes]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0042327 P positive regulation of phosphorylation
GO:1901215 P negative regulation of neuron death
FPKM:4.71 TPM:3.72
463 A_BomoMG_comp129550_c0_seq1
466bp
FPKM:2.68 TPM:2.12
464 A_BomoMG_comp129583_c0_seq1
218bp
FPKM:3.65 TPM:2.89
465 A_BomoMG_comp129625_c0_seq1
465bp
FPKM:6.55 TPM:5.17
466 A_BomoMG_comp129672_c0_seq1
312bp
 hypothetical_protein_[Mesoflavibacter_zeaxanthinifaciens]
FPKM:3.39 TPM:2.68
467 A_BomoMG_comp129684_c0_seq1
532bp
 LSM1-like_protein_[Bombyx_mori]
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000339 F RNA cap binding
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0019827 P stem cell population maintenance
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0045665 P negative regulation of neuron differentiation
GO:0071044 P histone mRNA catabolic process
FPKM:7.24 TPM:5.72
468 A_BomoMG_comp129695_c0_seq1
494bp
 PREDICTED:_hydrocephalus-inducing_protein_homolog_[Bombyx_mori]
FPKM:3.21 TPM:2.54
469 A_BomoMG_comp129697_c0_seq1
1990bp
 poly(A)-specific_ribonuclease_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006402 P mRNA catabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0051321 P meiotic cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
FPKM:5.05 TPM:3.99
470 A_BomoMG_comp129799_c0_seq1
564bp
FPKM:5.79 TPM:4.58
471 A_BomoMG_comp129804_c0_seq1
553bp
 mitochondrial_import_inner_membrane_translocase_subunit_Tim9A_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005744 C TIM23 mitochondrial import inner membrane translocase complex
GO:0006626 P protein targeting to mitochondrion
GO:0006810 P transport
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0015450 F protein-transporting ATPase activity
GO:0016020 C membrane
GO:0042719 C mitochondrial intermembrane space protein transporter complex
GO:0042721 C TIM22 mitochondrial import inner membrane insertion complex
GO:0045039 P protein insertion into mitochondrial inner membrane
GO:0046872 F metal ion binding
GO:0072321 P obsolete chaperone-mediated protein transport
FPKM:5.77 TPM:4.55
472 A_BomoMG_comp129834_c0_seq1
1064bp
 hypothetical_protein_KGM_00706_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
FPKM:5.30 TPM:4.19
473 A_BomoMG_comp129879_c0_seq1
1061bp
 PREDICTED:_probable_nucleoporin_Nup58_[Bombyx_mori]
FPKM:4.75 TPM:3.75
474 A_BomoMG_comp129958_c0_seq1
1081bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_bromodomain-containing_protein_4-like_[Bombyx_mori]
FPKM:4.29 TPM:3.39
475 A_BomoMG_comp129981_c0_seq1
2125bp
 PREDICTED:_aarF_domain-containing_protein_kinase_4_[Bombyx_mori]
GO:0004674 F protein serine/threonine kinase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0031966 C mitochondrial membrane
GO:0032836 P glomerular basement membrane development
GO:0072015 P glomerular visceral epithelial cell development
FPKM:3.43 TPM:2.71
476 A_BomoMG_comp130024_c0_seq1
774bp
FPKM:4.38 TPM:3.46
477 A_BomoMG_comp130169_c0_seq1
880bp
FPKM:4.61 TPM:3.64
478 A_BomoMG_comp130174_c0_seq1
753bp
 PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_31_[Plutella_xylostella]
GO:0001104 F transcription coregulator activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016592 C mediator complex
FPKM:1.78 TPM:1.40
479 A_BomoMG_comp130240_c0_seq1
540bp
FPKM:6.43 TPM:5.08
480 A_BomoMG_comp130253_c0_seq1
705bp
 PREDICTED:_TMV_resistance_protein_N-like_isoform_X2_[Fragaria_vesca_subsp._vesca]
FPKM:4.99 TPM:3.94
previous next from show/43914

- SilkBase 1999-2023 -