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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
391 A_BomoMG_comp124826_c0_seq1
543bp
 PREDICTED:_E3_ubiquitin-protein_ligase_listerin_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
GO:1990116 P ribosome-associated ubiquitin-dependent protein catabolic process
FPKM:4.79 TPM:3.78
392 A_BomoMG_comp124911_c0_seq1
1475bp
 PREDICTED:_vacuolar_fusion_protein_CCZ1_homolog_[Papilio_polytes]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0031988 C vesicle
GO:0043231 C intracellular membrane-bounded organelle
FPKM:5.70 TPM:4.50
393 A_BomoMG_comp124918_c0_seq1
1808bp
 PREDICTED:_exocyst_complex_component_4_[Bombyx_mori]
GO:0000145 C exocyst
GO:0000916 P actomyosin contractile ring contraction
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0006904 P vesicle docking involved in exocytosis
GO:0007009 P plasma membrane organization
GO:0007110 P meiosis I cytokinesis
GO:0007111 P meiosis II cytokinesis
GO:0007269 P neurotransmitter secretion
GO:0007286 P spermatid development
GO:0007298 P border follicle cell migration
GO:0009925 C basal plasma membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016028 C rhabdomere
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0016192 P vesicle-mediated transport
GO:0016324 C apical plasma membrane
GO:0050803 P regulation of synapse structure or activity
GO:0090522 P vesicle tethering involved in exocytosis
GO:0098793 C presynapse
FPKM:4.35 TPM:3.44
394 A_BomoMG_comp124988_c0_seq1
321bp
FPKM:7.71 TPM:6.09
395 A_BomoMG_comp124995_c0_seq1
422bp
 PREDICTED:_endoplasmic_reticulum_metallopeptidase_1-like,_partial_[Bombyx_mori]
FPKM:7.30 TPM:5.77
396 A_BomoMG_comp125020_c0_seq1
544bp
FPKM:7.21 TPM:5.69
397 A_BomoMG_comp125176_c0_seq1
441bp
 endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
FPKM:6.51 TPM:5.14
398 A_BomoMG_comp125255_c0_seq1
240bp
 conserved_hypothetical_protein_[Trypanosoma_vivax_Y486]
FPKM:9.22 TPM:7.29
399 A_BomoMG_comp125390_c0_seq1
989bp
FPKM:3.44 TPM:2.72
400 A_BomoMG_comp125403_c0_seq1
374bp
FPKM:8.03 TPM:6.35
401 A_BomoMG_comp125422_c0_seq1
864bp
 ras-related_protein_Rab7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000331 C contractile vacuole
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005764 C lysosome
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005773 C vacuole
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005829 C cytosol
GO:0006886 P intracellular protein transport
GO:0006895 P Golgi to endosome transport
GO:0006913 P nucleocytoplasmic transport
GO:0006970 P response to osmotic stress
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031164 C contractile vacuolar membrane
GO:0032456 P endocytic recycling
GO:0033298 P contractile vacuole organization
GO:0042742 P defense response to bacterium
GO:0044351 P macropinocytosis
GO:0045335 C phagocytic vesicle
GO:0048548 P regulation of pinocytosis
GO:0055037 C recycling endosome
GO:0090382 P phagosome maturation
GO:0090387 P phagolysosome assembly involved in apoptotic cell clearance
FPKM:4.56 TPM:3.60
402 A_BomoMG_comp12545_c0_seq1
359bp
FPKM:0.70 TPM:0.56
403 A_BomoMG_comp125460_c0_seq1
355bp
FPKM:6.09 TPM:4.81
404 A_BomoMG_comp125576_c0_seq1
201bp
FPKM:6.74 TPM:5.33
405 A_BomoMG_comp125788_c0_seq1
298bp
FPKM:9.88 TPM:7.80
406 A_BomoMG_comp125795_c0_seq1
890bp
 PREDICTED:_WD_repeat-containing_protein_3-like_[Bombyx_mori]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030515 F snoRNA binding
GO:0031965 C nuclear membrane
GO:0032040 C small-subunit processome
GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome
GO:0044822 F RNA binding
FPKM:5.79 TPM:4.58
407 A_BomoMG_comp1258_c0_seq1
216bp
FPKM:1.61 TPM:1.27
408 A_BomoMG_comp1258_c1_seq1
211bp
 TMV_resistance_protein_N_[Glycine_soja]
FPKM:1.15 TPM:0.91
409 A_BomoMG_comp125924_c0_seq1
877bp
 PREDICTED:_vacuolar_protein_sorting-associated_protein_13D_[Bombyx_mori]
GO:0005622 C intracellular anatomical structure
GO:0006623 P protein targeting to vacuole
GO:0019898 C extrinsic component of membrane
GO:0045053 P protein retention in Golgi apparatus
GO:0070062 C extracellular exosome
FPKM:5.29 TPM:4.18
410 A_BomoMG_comp126024_c0_seq1
1974bp
 PREDICTED:_5'-3'_exoribonuclease_1_isoform_X2_[Bombyx_mori]
GO:0000723 P telomere maintenance
GO:0000932 C P-body
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004534 F 5'-3' exoribonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006396 P RNA processing
GO:0007126 P meiotic cell cycle
GO:0007569 P cell aging
GO:0016020 C membrane
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0045111 C intermediate filament cytoskeleton
GO:0071028 P nuclear mRNA surveillance
GO:0071044 P histone mRNA catabolic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
FPKM:4.16 TPM:3.29
411 A_BomoMG_comp126124_c0_seq1
243bp
FPKM:3.88 TPM:3.07
412 A_BomoMG_comp126266_c0_seq1
244bp
FPKM:1.54 TPM:1.22
413 A_BomoMG_comp126519_c0_seq1
475bp
 PREDICTED:_U6_snRNA-associated_Sm-like_protein_LSm6_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0005730 C nucleolus
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006397 P mRNA processing
GO:0006402 P mRNA catabolic process
GO:0008033 P tRNA processing
GO:0008380 P RNA splicing
GO:0030490 P maturation of SSU-rRNA
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0046982 F protein heterodimerization activity
GO:0070062 C extracellular exosome
FPKM:5.10 TPM:4.03
414 A_BomoMG_comp126680_c0_seq1
1441bp
 PREDICTED:_oxysterol-binding_protein-related_protein_9_[Bombyx_mori]
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008289 F lipid binding
GO:0010890 P positive regulation of sequestering of triglyceride
GO:0016020 C membrane
GO:0031902 C late endosome membrane
GO:0045444 P fat cell differentiation
FPKM:4.27 TPM:3.37
415 A_BomoMG_comp126698_c0_seq1
640bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_27C_isoform_X1_[Plutella_xylostella]
FPKM:3.62 TPM:2.86
416 A_BomoMG_comp126790_c0_seq1
401bp
 hypothetical_protein_KGM_06638_[Danaus_plexippus]
FPKM:8.06 TPM:6.36
417 A_BomoMG_comp126835_c0_seq1
502bp
FPKM:5.44 TPM:4.30
418 A_BomoMG_comp126868_c0_seq1
1092bp
FPKM:5.73 TPM:4.53
419 A_BomoMG_comp126893_c0_seq1
349bp
FPKM:3.13 TPM:2.48
420 A_BomoMG_comp126902_c0_seq1
351bp
FPKM:6.57 TPM:5.19
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