SearchView

Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

361

A_BomoMG_comp122608_c0_seq1

2761bp

Bomo_Chr25

PREDICTED:_beta-mannosidase-like_isoform_X1_[Amyelois_transitella]

GO:0004553	F	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004567	F	beta-mannosidase activity
GO:0005764	C	lysosome
GO:0005975	P	carbohydrate metabolic process
GO:0008152	P	metabolic process
GO:0016787	F	hydrolase activity
GO:0016798	F	hydrolase activity, acting on glycosyl bonds

FPKM:5.50 TPM:4.35

362

A_BomoMG_comp122647_c0_seq1

1123bp

Bomo_Chr25

PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_34-like_[Bombyx_mori]

GO:0000124	C	SAGA complex
GO:0004197	F	cysteine-type endopeptidase activity
GO:0004843	F	thiol-dependent deubiquitinase
GO:0005515	F	protein binding
GO:0005829	C	cytosol
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006508	P	proteolysis
GO:0006511	P	ubiquitin-dependent protein catabolic process
GO:0008233	F	peptidase activity
GO:0008234	F	cysteine-type peptidase activity
GO:0016055	P	Wnt signaling pathway
GO:0016578	P	histone deubiquitination
GO:0016579	P	protein deubiquitination
GO:0016787	F	hydrolase activity
GO:0036459	F	thiol-dependent deubiquitinase
GO:0071108	P	protein K48-linked deubiquitination
GO:0090263	P	positive regulation of canonical Wnt signaling pathway

FPKM:6.46 TPM:5.11

363

A_BomoMG_comp122781_c0_seq1

410bp

Bomo_Chr17

FPKM:6.51 TPM:5.14

364

A_BomoMG_comp122781_c0_seq2

410bp

Bomo_Chr17

FPKM:0.00 TPM:0.00

365

A_BomoMG_comp122845_c0_seq1

1299bp

Bomo_Chr22

PREDICTED:_BRCA1-A_complex_subunit_BRE-like_[Amyelois_transitella]

GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0006281	P	DNA repair
GO:0006302	P	double-strand break repair
GO:0006915	P	apoptotic process
GO:0006974	P	cellular response to DNA damage stimulus
GO:0007049	P	cell cycle
GO:0007067	P	mitotic cell cycle
GO:0010212	P	response to ionizing radiation
GO:0016568	P	chromatin organization
GO:0031572	P	mitotic G2 DNA damage checkpoint signaling
GO:0031593	F	polyubiquitin modification-dependent protein binding
GO:0045739	P	positive regulation of DNA repair
GO:0051301	P	cell division
GO:0070531	C	BRCA1-A complex
GO:0070552	C	BRISC complex

FPKM:5.80 TPM:4.58

366

A_BomoMG_comp122865_c0_seq1

849bp

Bomo_Chr15

Nep1_protein_[Bombyx_mori]

GO:0000462	P	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723	F	RNA binding
GO:0005575	C	cellular_component
GO:0005634	C	nucleus
GO:0005730	C	nucleolus
GO:0006364	P	rRNA processing
GO:0008168	F	methyltransferase activity
GO:0009267	P	cellular response to starvation
GO:0016740	F	transferase activity
GO:0019843	F	rRNA binding
GO:0022008	P	neurogenesis
GO:0031167	P	rRNA methylation
GO:0032040	C	small-subunit processome
GO:0032259	P	methylation
GO:0040018	P	positive regulation of multicellular organism growth
GO:0042254	P	ribosome biogenesis
GO:0042742	P	defense response to bacterium
GO:0070037	F	rRNA (pseudouridine) methyltransferase activity
GO:0070475	P	rRNA base methylation

FPKM:4.71 TPM:3.72

367

A_BomoMG_comp123149_c0_seq1

639bp

Bomo_Chr15

FPKM:5.74 TPM:4.53

368

A_BomoMG_comp123224_c0_seq1

662bp

Bomo_Chr5

FPKM:4.76 TPM:3.76

369

A_BomoMG_comp123389_c0_seq1

204bp

Bomo_Chr20

FPKM:2.57 TPM:2.03

370

A_BomoMG_comp123612_c0_seq1

404bp

Bomo_Chr28

FPKM:4.92 TPM:3.89

371

A_BomoMG_comp123845_c0_seq1

203bp

Bomo_Chr4

FPKM:0.65 TPM:0.52

372

A_BomoMG_comp124205_c0_seq1

707bp

Bomo_Chr22

PREDICTED:_LOW_QUALITY_PROTEIN:_integrator_complex_subunit_12_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0005634	C	nucleus
GO:0008270	F	zinc ion binding
GO:0016180	P	snRNA processing
GO:0032039	C	integrator complex
GO:0046872	F	metal ion binding

FPKM:2.06 TPM:1.62

373

A_BomoMG_comp124216_c0_seq1

280bp

Bomo_Scaf025

FPKM:3.37 TPM:2.66

374

A_BomoMG_comp124244_c0_seq1

331bp

Bomo_Scaf006

FPKM:8.71 TPM:6.88

375

A_BomoMG_comp124253_c0_seq1

570bp

Bomo_Chr22

FPKM:3.95 TPM:3.12

376

A_BomoMG_comp124267_c0_seq1

473bp

Bomo_Scaf335

FPKM:5.25 TPM:4.14

377

A_BomoMG_comp124334_c0_seq1

809bp

Bomo_Chr5

6-pyruvoyltetrahydropterin_synthase_[Bombyx_mori]

GO:0003874	F	6-pyruvoyltetrahydropterin synthase activity
GO:0005515	F	protein binding
GO:0005737	C	cytoplasm
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0006520	P	cellular amino acid metabolic process
GO:0006729	P	tetrahydrobiopterin biosynthetic process
GO:0007417	P	central nervous system development
GO:0016829	F	lyase activity
GO:0042802	F	identical protein binding
GO:0042803	F	protein homodimerization activity
GO:0046872	F	metal ion binding
GO:0050999	P	regulation of nitric-oxide synthase activity

FPKM:6.67 TPM:5.27

378

A_BomoMG_comp124375_c0_seq1

1497bp

Bomo_Chr10

PREDICTED:_TAR_DNA-binding_protein_43-like_isoform_X1_[Amyelois_transitella]

GO:0000166	F	nucleotide binding
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003723	F	RNA binding
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006397	P	mRNA processing
GO:0008380	P	RNA splicing

FPKM:4.51 TPM:3.56

379

A_BomoMG_comp124410_c0_seq1

324bp

Bomo_Chr15

hypothetical_protein_AWN68_08415_[Roseivirga_echinicomitans]

FPKM:6.74 TPM:5.32

380

A_BomoMG_comp124473_c0_seq1

266bp

Bomo_Scaf202

FPKM:0.94 TPM:0.74

381

A_BomoMG_comp124493_c0_seq1

204bp

Bomo_Chr18

FPKM:6.42 TPM:5.07

382

A_BomoMG_comp124519_c0_seq1

887bp

Bomo_Chr16

PREDICTED:_uncharacterized_protein_LOC106117577_isoform_X2_[Papilio_xuthus]

FPKM:5.77 TPM:4.56

383

A_BomoMG_comp124523_c0_seq1

658bp

Bomo_Chr15

FPKM:5.96 TPM:4.71

384

A_BomoMG_comp124540_c0_seq1

383bp

Bomo_Chr24

hypothetical_protein_[Paenibacillus_polymyxa]

FPKM:6.31 TPM:4.98

385

A_BomoMG_comp124558_c0_seq1

435bp

Bomo_Scaf328

FPKM:6.20 TPM:4.90

386

A_BomoMG_comp124593_c0_seq1

2556bp

Bomo_Chr13

PREDICTED:_DNA-binding_protein_D-ETS-4_isoform_X2_[Amyelois_transitella]

GO:0000981	F	DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677	F	DNA binding
GO:0003700	F	DNA-binding transcription factor activity
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006357	P	regulation of transcription by RNA polymerase II
GO:0008354	P	germ cell migration
GO:0030154	P	cell differentiation
GO:0043565	F	sequence-specific DNA binding

FPKM:4.29 TPM:3.39

387

A_BomoMG_comp124610_c0_seq1

354bp

Bomo_Chr14

hypothetical_protein_K437DRAFT_257809_[Tilletiaria_anomala_UBC_951]

FPKM:5.94 TPM:4.69

388

A_BomoMG_comp124653_c0_seq1

808bp

Bomo_Chr26

PREDICTED:_mitoferrin-1-like_[Plutella_xylostella]

GO:0003735	F	structural constituent of ribosome
GO:0005381	F	iron ion transmembrane transporter activity
GO:0005739	C	mitochondrion
GO:0005743	C	mitochondrial inner membrane
GO:0006412	P	translation
GO:0006810	P	transport
GO:0006811	P	ion transport
GO:0006839	P	mitochondrial transport
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0022857	F	transmembrane transporter activity
GO:0031966	C	mitochondrial membrane
GO:0034755	P	iron ion transmembrane transport
GO:0048250	P	iron import into the mitochondrion
GO:0048515	P	spermatid differentiation
GO:0055072	P	iron ion homeostasis
GO:0055085	P	transmembrane transport
GO:0060586	P	multicellular organismal iron ion homeostasis