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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
331 A_BomoMG_comp121142_c0_seq1
428bp
FPKM:2.91 TPM:2.30
332 A_BomoMG_comp121186_c0_seq1
1869bp
FPKM:4.22 TPM:3.34
333 A_BomoMG_comp121187_c0_seq1
224bp
FPKM:1.93 TPM:1.52
334 A_BomoMG_comp1212902_c0_seq1
252bp
FPKM:1.07 TPM:0.84
335 A_BomoMG_comp121318_c0_seq1
264bp
FPKM:2.55 TPM:2.02
336 A_BomoMG_comp121647_c0_seq1
439bp
 PREDICTED:_pecanex-like_protein_1_[Bombyx_mori]
FPKM:7.77 TPM:6.14
337 A_BomoMG_comp121815_c0_seq1
607bp
FPKM:5.25 TPM:4.15
338 A_BomoMG_comp121833_c0_seq1
251bp
 hypothetical_protein_[Clostridium_sp._JC272]
FPKM:10.40 TPM:8.22
339 A_BomoMG_comp121834_c0_seq1
737bp
 PREDICTED:_protein_fem-1_homolog_CG6966_isoform_X2_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0006470 P protein dephosphorylation
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0017124 F SH3 domain binding
GO:0035335 P peptidyl-tyrosine dephosphorylation
FPKM:5.16 TPM:4.08
340 A_BomoMG_comp121870_c0_seq1
465bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_monocarboxylate_transporter_3_[Plutella_xylostella]
FPKM:4.68 TPM:3.69
341 A_BomoMG_comp121910_c0_seq1
651bp
FPKM:5.16 TPM:4.08
342 A_BomoMG_comp121932_c0_seq1
350bp
FPKM:9.36 TPM:7.39
343 A_BomoMG_comp121959_c0_seq1
1824bp
 PREDICTED:_guanine_nucleotide-binding_protein-like_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002456 P T cell mediated immunity
GO:0003924 F GTPase activity
GO:0005198 F structural molecule activity
GO:0005525 F GTP binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0006974 P cellular response to DNA damage stimulus
GO:0007165 P signal transduction
GO:0042254 P ribosome biogenesis
FPKM:5.77 TPM:4.56
344 A_BomoMG_comp122051_c0_seq1
1378bp
 PREDICTED:_cleavage_stimulation_factor_subunit_2_tau_variant_isoform_X2_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0031124 P mRNA 3'-end processing
GO:0071920 C cleavage body
GO:0098789 P pre-mRNA cleavage required for polyadenylation
FPKM:5.27 TPM:4.17
345 A_BomoMG_comp122054_c0_seq1
1010bp
FPKM:3.48 TPM:2.75
346 A_BomoMG_comp122070_c0_seq1
1594bp
FPKM:4.92 TPM:3.89
347 A_BomoMG_comp122114_c0_seq1
282bp
FPKM:6.08 TPM:4.80
348 A_BomoMG_comp122148_c0_seq1
397bp
FPKM:6.99 TPM:5.53
349 A_BomoMG_comp122219_c0_seq1
2526bp
 hypothetical_protein_KGM_17528_[Danaus_plexippus]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:4.30 TPM:3.40
350 A_BomoMG_comp122280_c0_seq1
752bp
 PREDICTED:_UPF0428_protein_CXorf56_homolog_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:5.22 TPM:4.12
351 A_BomoMG_comp122316_c0_seq1
1423bp
 Uncharacterized_protein_OBRU01_16214_[Operophtera_brumata]
GO:0004871 F obsolete signal transducer activity
GO:0004930 F G protein-coupled receptor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006726 P eye pigment biosynthetic process
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007218 P neuropeptide signaling pathway
GO:0007601 P visual perception
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0032400 P melanosome localization
GO:0032402 P melanosome transport
GO:0032438 P melanosome organization
GO:0033162 C melanosome membrane
GO:0035240 F dopamine binding
GO:0035584 P calcium-mediated signaling using intracellular calcium source
GO:0035643 F L-DOPA receptor activity
GO:0042470 C melanosome
GO:0048015 P phosphatidylinositol-mediated signaling
GO:0050848 P regulation of calcium-mediated signaling
GO:0072544 F L-DOPA binding
GO:0072545 F tyrosine binding
GO:1902908 P regulation of melanosome transport
GO:1903056 P regulation of melanosome organization
FPKM:4.48 TPM:3.54
352 A_BomoMG_comp122355_c0_seq1
454bp
FPKM:4.97 TPM:3.92
353 A_BomoMG_comp122361_c0_seq1
426bp
 PREDICTED:_PAX-interacting_protein_1_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
FPKM:7.33 TPM:5.79
354 A_BomoMG_comp122374_c0_seq1
2004bp
 orthodenticle_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0001745 P compound eye morphogenesis
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007355 P anterior region determination
GO:0007389 P pattern specification process
GO:0007399 P nervous system development
GO:0007417 P central nervous system development
GO:0007419 P ventral cord development
GO:0007420 P brain development
GO:0007628 P adult walking behavior
GO:0008056 P ocellus development
GO:0010628 P positive regulation of gene expression
GO:0035284 P brain segmentation
GO:0035288 P anterior head segmentation
GO:0042051 P compound eye photoreceptor development
GO:0042052 P rhabdomere development
GO:0042463 P ocellus photoreceptor cell development
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0045315 P positive regulation of compound eye photoreceptor development
GO:0045871 P obsolete negative regulation of rhodopsin gene expression
GO:0045872 P obsolete positive regulation of rhodopsin gene expression
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046552 P photoreceptor cell fate commitment
GO:0046982 F protein heterodimerization activity
GO:0048816 P ocellus morphogenesis
GO:0061541 P rhabdomere morphogenesis
FPKM:5.33 TPM:4.21
355 A_BomoMG_comp122402_c0_seq1
203bp
FPKM:1.96 TPM:1.55
356 A_BomoMG_comp122452_c0_seq1
258bp
 PREDICTED:_nuclear_pore_complex_protein_Nup205-like_[Plutella_xylostella]
FPKM:12.44 TPM:9.83
357 A_BomoMG_comp122474_c0_seq1
345bp
FPKM:6.58 TPM:5.20
358 A_BomoMG_comp122521_c0_seq1
1014bp
 WD_repeat_domain_61_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016593 C Cdc73/Paf1 complex
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0055087 C Ski complex
FPKM:5.95 TPM:4.70
359 A_BomoMG_comp122528_c0_seq1
322bp
 NAD-dependent_dehydratase_[Staphylococcus_simulans]
FPKM:6.81 TPM:5.38
360 A_BomoMG_comp122538_c0_seq1
370bp
 PREDICTED:_uncharacterized_protein_LOC105953515_[Erythranthe_guttata]
FPKM:5.17 TPM:4.09
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