SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoMG_comp122374_c0_seq1
Scaffold_idBomo_Chr24
NCBI non-redundant
(nr)		orthodenticle_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0001745 P compound eye morphogenesis
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007355 P anterior region determination
GO:0007389 P pattern specification process
GO:0007399 P nervous system development
GO:0007417 P central nervous system development
GO:0007419 P ventral cord development
GO:0007420 P brain development
GO:0007628 P adult walking behavior
GO:0008056 P ocellus development
GO:0010628 P positive regulation of gene expression
GO:0035284 P brain segmentation
GO:0035288 P anterior head segmentation
GO:0042051 P compound eye photoreceptor development
GO:0042052 P rhabdomere development
GO:0042463 P ocellus photoreceptor cell development
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0045315 P positive regulation of compound eye photoreceptor development
GO:0045871 P obsolete negative regulation of rhodopsin gene expression
GO:0045872 P obsolete positive regulation of rhodopsin gene expression
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046552 P photoreceptor cell fate commitment
GO:0046982 F protein heterodimerization activity
GO:0048816 P ocellus morphogenesis
GO:0061541 P rhabdomere morphogenesis
Transcript
Level		FPKM:5.33 TPM:4.21
ORF EntryO_BomoMG27966_complete:A_BomoMG_comp122374_c0_seq1
Sequence
(Nucleotide)
AATGGTTACAAGACCTTATAGCCTAAATAAACCGCTCATTTTCGTCAATGTTGCAAGACC
ACAAACAAAAAAATTCCCTGTAAACGACAAAGGCATAATATATTTATTTACAATAAAAGA
CTAGAAATCGCATTAGACCATATTTATTCCGTATTTCTCGGGCGCGAAGTAGCTGTTTCC
CGTGTTGGAGAAGTTTGTTATCTGCGTTGCTTGGAGCATGCTCAGATGAGGATTCTGCTG
GTTCTCCGGGGACTCGGGACCTGAAGCTAGAATGTTGTGGGACGACCAGCCGGTCGGAGG
CGAGGGGTTCCCGAACGACACTTGGTTGTAGAGCTGATTGCTATTGGTGCTTAAGTTGTG
GCCGTGGTGTCCTCCGTGGGTCTGGTTCACGGACGTACCGTTGAAGTATTCCATCTGACT
TGGATAATAAGGCGAATTGTAAGCACTCTGCCCGTATCCTTGGTGATGATGTGAAGTTGA
GTAGCTCCTAATGTAGTCCGAGCTGCCGGGCCAGTGGAAGCTGTTGTAGTTATCCGGGTG
GTAAACGTTCCCCGGGCCATTAATGCTCTGGGGGGTGATAGGGGGTGACGGGGTCGTCAT
GATCGAAGAGTTGGAGCCCAGCGGCGTCAGGTTACCGGTTAAACGGGAGCTGTATTGGTC
CTTAACAAGGTTACTGCCGAAGGATTTCTCAGTGTAATCCAATTTGCTGGAATACTCTAG
CCTTTTCGGGCTACTGTACAGCTCTTGTTTGGGCGTCACTCCGTAGCCGTGGATGTCTGA
GCTCTCCTTCCCGCTCACCCTTGAGTCGTAGTGAGACAACGAGGTCAAGCTGTTCTTGGT
CAATGGGGAAGTCTCGTAACTAGATCCGGCCGCTTCCTTCTTACAGATCACGTTAATCGG
GGGACTTACTGAAGTCGTGGGCGTTATCGGTAGATTCGGGGAGGAAGTCGTGATCGAGGA
GTTTTGGCTCGTCGTCAAGCTCGTGGAGGAGCTCGTCATGGTTTTGGAGGTGGTCGCTTT
TGAGGCGGACGTCGAGTTTCCTTTGATGGCGTTGCTCGACGATACGCTGGTTTTCGCACT
GGACGACGACTTACTCGTTATCTGAGAGTTAGTTTGCTGTTGTAACTGTTGTCTGCATTT
CGCTCTCCGGTTTTTGAACCAGACCTGCACTCTAGATTCTGGAAGGTTTATCTTCAGCGC
GACCTCCTCCCTCATGAAGATGTCAGGGTATCGCGTCTTCCCGAACAATGCTTCGAGTAC
GTCCAGCTGAGCTCTCGTGAAGGTAGTCCTTTCTCTGCGCTGTTTCCTGGGGTTCACTCC
TTGAGGAAATCCTACGGCTTCCAATCCGTGCGGGGTCAGCCCAAACGGCCCCAAGCCACC
GAGCGGCCCGGGCCCCATGCCCATGTGGTGAGCGCTCGAATGATGAGCATACGGGTTCTG
CGCCAACGGCGACGGTTGCTTCAAGTAGTGGAAGTAGTGGTGTAGGGGCGTCGTGGAGTG
GTGGGCCTGCGGGGCGGTCGGCCCGCTGGCCGTGGGACCGGTGGTCGAGGAGTTGGTCAG
CAGCGCCATGTCGGGTTGAGTTAGTCACCGGTGCAGCCTTCTTCGTGTGTGTGTGGACAT
CTTGGGGAGGCGTTTTAGTTCGAGACTCGATTCGAAGGTCGGCACGTAGACATGTTTTTG
GTTCTTGAAAACGTTAAAATCCAAACACCGAAGTAATTCAAATTAAAAAAACACTAAAAC
CAAAAAACACATGGAGCTCGATTCAATATAATATATTTTTTCTTTCTTTTCTAAACATAA
ATTCGTCAATCTATCACTGGAGTTGAACAACAATTGATATGTTCATAATCTTATCAGGGA
GAACATATTTTTTAATCAGTTTATTCATTAAAAAACACTTTTACAAAACTATATTTAGGC
CTTTTTGTGTGAAATCTAAGAGTTATGGCGTTGTACGCGGGAGAATTCGATAATGTACCG
CGGACAGACGCGTCACCAATGGCG
(2004 bp)

- SilkBase 1999-2023 -