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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
301 A_BomoMG_comp118344_c0_seq1
763bp
 FLJ37770-like_protein,_partial_[Acromyrmex_echinatior]
FPKM:5.30 TPM:4.19
302 A_BomoMG_comp118627_c0_seq1
711bp
 PREDICTED:_protein_kibra_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016020 C membrane
GO:0016324 C apical plasma membrane
GO:0035330 P regulation of hippo signaling
FPKM:7.24 TPM:5.72
303 A_BomoMG_comp118663_c0_seq1
345bp
 hypothetical_protein_KGM_06658_[Danaus_plexippus]
GO:0000151 C ubiquitin ligase complex
GO:0001701 P in utero embryonic development
GO:0001967 P suckling behavior
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007608 P sensory perception of smell
GO:0008270 F zinc ion binding
GO:0009790 P embryo development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042048 P olfactory behavior
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
FPKM:7.52 TPM:5.94
304 A_BomoMG_comp118697_c0_seq1
435bp
FPKM:5.94 TPM:4.69
305 A_BomoMG_comp118744_c0_seq1
451bp
FPKM:2.45 TPM:1.93
306 A_BomoMG_comp118759_c0_seq1
384bp
FPKM:4.08 TPM:3.23
307 A_BomoMG_comp118899_c0_seq1
791bp
FPKM:3.86 TPM:3.05
308 A_BomoMG_comp119007_c0_seq1
1049bp
FPKM:4.85 TPM:3.84
309 A_BomoMG_comp119174_c0_seq1
408bp
FPKM:9.12 TPM:7.21
310 A_BomoMG_comp119324_c0_seq1
310bp
 A_Chain_A,_Crystal_Structure_Of_A_Soluble_Rieske_Ferredoxin_From_Mus_Musculus
FPKM:8.69 TPM:6.87
311 A_BomoMG_comp119391_c0_seq1
407bp
FPKM:3.86 TPM:3.05
312 A_BomoMG_comp119529_c0_seq1
747bp
 Uncharacterized_protein_OBRU01_08034_[Operophtera_brumata]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:7.67 TPM:6.06
313 A_BomoMG_comp119599_c0_seq1
357bp
 PREDICTED:_histone-lysine_N-methyltransferase_SETMAR-like_[Camponotus_floridanus]
FPKM:10.11 TPM:7.98
314 A_BomoMG_comp119608_c0_seq1
1743bp
 Cohesin_subunit_SA-1_[Papilio_xuthus]
GO:0000775 C chromosome, centromeric region
GO:0000785 C chromatin
GO:0001228 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005886 C plasma membrane
GO:0006366 P transcription by RNA polymerase II
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007062 P sister chromatid cohesion
GO:0007067 P mitotic cell cycle
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0019827 P stem cell population maintenance
GO:0032876 P negative regulation of DNA endoreduplication
GO:0045111 C intermediate filament cytoskeleton
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
FPKM:6.32 TPM:4.99
315 A_BomoMG_comp119776_c0_seq1
1975bp
 PREDICTED:_cystathionine_beta-synthase-like_[Bombyx_mori]
GO:0001887 P selenium compound metabolic process
GO:0001958 P endochondral ossification
GO:0001974 P blood vessel remodeling
GO:0004122 F cystathionine beta-synthase activity
GO:0004124 F cysteine synthase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006535 P cysteine biosynthetic process from serine
GO:0006563 P L-serine metabolic process
GO:0006801 P superoxide metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0016829 F lyase activity
GO:0019343 P cysteine biosynthetic process via cystathionine
GO:0019344 P cysteine biosynthetic process
GO:0019346 P transsulfuration
GO:0020037 F heme binding
GO:0021587 P cerebellum morphogenesis
GO:0030170 F pyridoxal phosphate binding
GO:0030823 P obsolete regulation of cGMP metabolic process
GO:0031667 P response to nutrient levels
GO:0042803 F protein homodimerization activity
GO:0043066 P negative regulation of apoptotic process
GO:0043418 P homocysteine catabolic process
GO:0043506 P regulation of JUN kinase activity
GO:0046872 F metal ion binding
GO:0050667 P homocysteine metabolic process
GO:0050880 P blood vessel diameter maintenance
GO:0051593 P response to folic acid
GO:0060135 P maternal process involved in female pregnancy
GO:0060351 P cartilage development involved in endochondral bone morphogenesis
GO:0070814 P hydrogen sulfide biosynthetic process
GO:0071456 P cellular response to hypoxia
GO:0098605 F selenocystathionine beta-synthase activity
FPKM:4.75 TPM:3.75
316 A_BomoMG_comp119849_c0_seq1
288bp
 PREDICTED:_E3_ubiquitin-protein_ligase_RNF19B-like_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0000226 P microtubule cytoskeleton organization
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0031624 F ubiquitin conjugating enzyme binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
FPKM:9.25 TPM:7.31
317 A_BomoMG_comp119858_c0_seq1
476bp
 PREDICTED:_uncharacterized_protein_LOC101736794_isoform_X1_[Bombyx_mori]
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0005634 C nucleus
GO:0006401 P RNA catabolic process
GO:0032299 C ribonuclease H2 complex
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:6.78 TPM:5.36
318 A_BomoMG_comp119917_c0_seq1
378bp
FPKM:4.35 TPM:3.44
319 A_BomoMG_comp120138_c0_seq1
572bp
FPKM:7.49 TPM:5.92
320 A_BomoMG_comp120304_c0_seq1
1885bp
FPKM:4.20 TPM:3.32
321 A_BomoMG_comp120339_c0_seq1
274bp
 hypothetical_protein_HMPREF9248_0199_[Atopobium_vaginae_PB189-T1-4]
FPKM:3.23 TPM:2.55
322 A_BomoMG_comp120347_c0_seq1
267bp
FPKM:6.22 TPM:4.91
323 A_BomoMG_comp120568_c0_seq1
337bp
 hypothetical_protein_[Acidovorax_sp._Root217]
FPKM:7.89 TPM:6.23
324 A_BomoMG_comp120751_c0_seq1
351bp
 hypothetical_protein_RR48_00058_[Papilio_machaon]
FPKM:8.03 TPM:6.35
325 A_BomoMG_comp120812_c0_seq1
364bp
FPKM:4.12 TPM:3.25
326 A_BomoMG_comp120832_c0_seq1
384bp
FPKM:7.38 TPM:5.83
327 A_BomoMG_comp120918_c0_seq1
318bp
FPKM:2.40 TPM:1.89
328 A_BomoMG_comp120946_c0_seq1
313bp
FPKM:7.41 TPM:5.85
329 A_BomoMG_comp120983_c0_seq1
244bp
FPKM:6.54 TPM:5.16
330 A_BomoMG_comp121052_c0_seq1
225bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:2.38 TPM:1.88
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