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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2011 A_BomoMG_comp17583_c0_seq1
231bp
FPKM:3.55 TPM:2.80
2012 A_BomoMG_comp175850_c0_seq1
241bp
FPKM:2.78 TPM:2.19
2013 A_BomoMG_comp17585_c0_seq1
664bp
FPKM:3.02 TPM:2.38
2014 A_BomoMG_comp17587_c0_seq1
319bp
 hypothetical_protein_KGM_09267_[Danaus_plexippus]
GO:0000225 F N-acetylglucosaminylphosphatidylinositol deacetylase activity
GO:0005575 C cellular_component
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006506 P GPI anchor biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
FPKM:4.12 TPM:3.25
2015 A_BomoMG_comp17588_c0_seq1
1144bp
 PREDICTED:_UHRF1-binding_protein_1-like_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:2.16 TPM:1.71
2016 A_BomoMG_comp17589_c0_seq1
551bp
 PREDICTED:_uncharacterized_protein_LOC101737722_[Bombyx_mori]
FPKM:2.48 TPM:1.96
2017 A_BomoMG_comp175905_c0_seq1
1312bp
 PREDICTED:_kelch-like_protein_5_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003779 F actin binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0008150 P biological_process
GO:0016567 P protein ubiquitination
GO:0031463 C Cul3-RING ubiquitin ligase complex
FPKM:2.13 TPM:1.69
2018 A_BomoMG_comp17590_c0_seq1
457bp
FPKM:2.28 TPM:1.80
2019 A_BomoMG_comp17591_c0_seq1
611bp
 p53_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006914 P autophagy
GO:0006915 P apoptotic process
GO:0006978 P DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
GO:0007049 P cell cycle
GO:0007283 P spermatogenesis
GO:0009411 P response to UV
GO:0010165 P response to X-ray
GO:0016525 P negative regulation of angiogenesis
GO:0042771 P intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0043065 P positive regulation of apoptotic process
GO:0043280 P positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043525 P positive regulation of neuron apoptotic process
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045786 P negative regulation of cell cycle
GO:0045787 P positive regulation of cell cycle
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048730 P epidermis morphogenesis
GO:0051262 P protein tetramerization
GO:0051289 P protein homotetramerization
GO:0051597 P response to methylmercury
GO:0051782 P negative regulation of cell division
GO:0060216 P definitive hemopoiesis
GO:0060729 P intestinal epithelial structure maintenance
GO:0071456 P cellular response to hypoxia
GO:0090398 P cellular senescence
GO:0097193 P intrinsic apoptotic signaling pathway
GO:2000779 P regulation of double-strand break repair
FPKM:1.21 TPM:0.96
2020 A_BomoMG_comp17591_c0_seq2
934bp
 p53_[Bombyx_mori]
GO:0000077 P DNA damage checkpoint signaling
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006914 P autophagy
GO:0006915 P apoptotic process
GO:0006978 P DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
GO:0007049 P cell cycle
GO:0007283 P spermatogenesis
GO:0009411 P response to UV
GO:0010165 P response to X-ray
GO:0016525 P negative regulation of angiogenesis
GO:0042771 P intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0043065 P positive regulation of apoptotic process
GO:0043280 P positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043525 P positive regulation of neuron apoptotic process
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045786 P negative regulation of cell cycle
GO:0045787 P positive regulation of cell cycle
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048730 P epidermis morphogenesis
GO:0051262 P protein tetramerization
GO:0051289 P protein homotetramerization
GO:0051597 P response to methylmercury
GO:0051782 P negative regulation of cell division
GO:0060216 P definitive hemopoiesis
GO:0060729 P intestinal epithelial structure maintenance
GO:0071456 P cellular response to hypoxia
GO:0090398 P cellular senescence
GO:0097193 P intrinsic apoptotic signaling pathway
GO:2000779 P regulation of double-strand break repair
FPKM:2.07 TPM:1.63
2021 A_BomoMG_comp17593_c0_seq1
924bp
 PREDICTED:_phosphatidylinositol_N-acetylglucosaminyltransferase_subunit_A_[Papilio_polytes]
GO:0000506 C glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006506 P GPI anchor biosynthetic process
GO:0008194 F UDP-glycosyltransferase activity
GO:0009893 P positive regulation of metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016254 P preassembly of GPI anchor in ER membrane
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0017176 F phosphatidylinositol N-acetylglucosaminyltransferase activity
FPKM:2.58 TPM:2.04
2022 A_BomoMG_comp17598_c0_seq1
252bp
FPKM:4.98 TPM:3.93
2023 A_BomoMG_comp17599_c0_seq1
1142bp
 PREDICTED:_uncharacterized_protein_LOC106107610_isoform_X1_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0000723 P telomere maintenance
GO:0000784 C chromosome, telomeric region
GO:0001756 P somitogenesis
GO:0001933 P negative regulation of protein phosphorylation
GO:0002326 P B cell lineage commitment
GO:0002328 P pro-B cell differentiation
GO:0002360 P T cell lineage commitment
GO:0002377 P immunoglobulin production
GO:0002638 P negative regulation of immunoglobulin production
GO:0002684 P positive regulation of immune system process
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004677 F DNA-dependent protein kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005730 C nucleolus
GO:0005829 C cytosol
GO:0005958 C DNA-dependent protein kinase-DNA ligase 4 complex
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006464 P cellular protein modification process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007420 P brain development
GO:0007507 P heart development
GO:0008134 F transcription factor binding
GO:0008283 P cell population proliferation
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0010212 P response to ionizing radiation
GO:0010332 P response to gamma radiation
GO:0014823 P response to activity
GO:0016020 C membrane
GO:0016233 P telomere capping
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0018105 P peptidyl-serine phosphorylation
GO:0019899 F enzyme binding
GO:0030098 P lymphocyte differentiation
GO:0031648 P protein destabilization
GO:0032481 P positive regulation of type I interferon production
GO:0032869 P cellular response to insulin stimulus
GO:0033077 P T cell differentiation in thymus
GO:0033151 P V(D)J recombination
GO:0033152 P immunoglobulin V(D)J recombination
GO:0033153 P T cell receptor V(D)J recombination
GO:0035234 P ectopic germ cell programmed cell death
GO:0042752 P regulation of circadian rhythm
GO:0043065 P positive regulation of apoptotic process
GO:0043066 P negative regulation of apoptotic process
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048146 P positive regulation of fibroblast proliferation
GO:0048511 P rhythmic process
GO:0048536 P spleen development
GO:0048538 P thymus development
GO:0048639 P positive regulation of developmental growth
GO:0048660 P regulation of smooth muscle cell proliferation
GO:0070419 C nonhomologous end joining complex
GO:0072431 P mitotic G1 DNA damage checkpoint signaling
GO:0097681 P double-strand break repair via alternative nonhomologous end joining
GO:2000773 P negative regulation of cellular senescence
GO:2001229 P negative regulation of response to gamma radiation
FPKM:3.06 TPM:2.42
2024 A_BomoMG_comp17600_c0_seq1
433bp
 PREDICTED:_uncharacterized_protein_LOC101739757_isoform_X1_[Bombyx_mori]
FPKM:2.34 TPM:1.85
2025 A_BomoMG_comp17601_c0_seq1
290bp
 PREDICTED:_protein_unc-13_homolog_D_isoform_X4_[Bombyx_mori]
FPKM:4.96 TPM:3.92
2026 A_BomoMG_comp17602_c0_seq1
206bp
FPKM:1.86 TPM:1.47
2027 A_BomoMG_comp176048_c0_seq1
331bp
FPKM:1.62 TPM:1.28
2028 A_BomoMG_comp17604_c0_seq1
1820bp
 PREDICTED:_arginine-glutamic_acid_dipeptide_repeats_protein_[Papilio_xuthus]
GO:0000118 C histone deacetylase complex
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001105 F transcription coactivator activity
GO:0001106 F transcription corepressor activity
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006607 P NLS-bearing protein import into nucleus
GO:0007275 P multicellular organism development
GO:0008267 F poly-glutamine tract binding
GO:0008270 F zinc ion binding
GO:0021549 P cerebellum development
GO:0021691 P cerebellar Purkinje cell layer maturation
GO:0021930 P cerebellar granule cell precursor proliferation
GO:0021942 P radial glia guided migration of Purkinje cell
GO:0043565 F sequence-specific DNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048755 P branching morphogenesis of a nerve
GO:0048813 P dendrite morphogenesis
FPKM:2.13 TPM:1.68
2029 A_BomoMG_comp176058_c0_seq1
1430bp
FPKM:3.50 TPM:2.76
2030 A_BomoMG_comp17605_c0_seq1
529bp
FPKM:2.75 TPM:2.17
2031 A_BomoMG_comp17606_c0_seq1
237bp
 hypothetical_protein_AUK63_708_[bacterium_P3]
FPKM:4.97 TPM:3.93
2032 A_BomoMG_comp17607_c0_seq1
487bp
 hypothetical_protein_[Photobacterium_gaetbulicola]
FPKM:3.61 TPM:2.85
2033 A_BomoMG_comp17608_c0_seq1
643bp
 putative_laminin_A_chain_[Danaus_plexippus]
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005605 C basement membrane
GO:0007155 P cell adhesion
GO:0007435 P salivary gland morphogenesis
GO:0007494 P midgut development
GO:0009887 P animal organ morphogenesis
GO:0009888 P tissue development
GO:0012505 C endomembrane system
GO:0031012 C extracellular matrix
GO:0033627 P cell adhesion mediated by integrin
GO:0034446 P substrate adhesion-dependent cell spreading
GO:0048598 P embryonic morphogenesis
GO:0048731 P system development
GO:0061031 P endodermal digestive tract morphogenesis
GO:0070831 P basement membrane assembly
GO:0085029 P extracellular matrix assembly
FPKM:2.40 TPM:1.89
2034 A_BomoMG_comp17609_c0_seq1
362bp
FPKM:2.42 TPM:1.92
2035 A_BomoMG_comp17610_c0_seq1
1423bp
 PREDICTED:_THAP_domain-containing_protein_1-like_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
FPKM:1.77 TPM:1.40
2036 A_BomoMG_comp17611_c0_seq1
926bp
 hypothetical_protein_KGM_11965_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005319 F lipid transporter activity
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042493 P response to xenobiotic stimulus
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0044267 P cellular protein metabolic process
GO:0051384 P response to glucocorticoid
GO:0055085 P transmembrane transport
GO:0097208 C alveolar lamellar body
GO:0097232 C lamellar body membrane
GO:0097233 C alveolar lamellar body membrane
FPKM:2.43 TPM:1.92
2037 A_BomoMG_comp17611_c1_seq1
761bp
 PREDICTED:_ATP-binding_cassette_sub-family_A_member_3-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0051384 P response to glucocorticoid
GO:0055085 P transmembrane transport
GO:0097208 C alveolar lamellar body
GO:0097233 C alveolar lamellar body membrane
FPKM:1.93 TPM:1.53
2038 A_BomoMG_comp17612_c0_seq1
729bp
FPKM:2.81 TPM:2.22
2039 A_BomoMG_comp17613_c0_seq1
582bp
 PREDICTED:_putative_disease_resistance_RPP13-like_protein_3_[Brachypodium_distachyon]
FPKM:2.22 TPM:1.75
2040 A_BomoMG_comp17614_c0_seq1
255bp
 MULTISPECIES:_D-alanyl-D-alanine_carboxypeptidase_[Prochlorococcus]
FPKM:3.80 TPM:3.00
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