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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1981 A_BomoMG_comp17553_c0_seq1
306bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101739343_[Bombyx_mori]
FPKM:4.45 TPM:3.52
1982 A_BomoMG_comp17554_c0_seq1
1457bp
 PREDICTED:_uncharacterized_protein_LOC101746464_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006810 P transport
GO:0008150 P biological_process
GO:0015031 P protein transport
FPKM:2.15 TPM:1.70
1983 A_BomoMG_comp17556_c0_seq1
260bp
FPKM:3.96 TPM:3.13
1984 A_BomoMG_comp17558_c0_seq1
664bp
FPKM:2.94 TPM:2.33
1985 A_BomoMG_comp17559_c0_seq1
348bp
FPKM:2.78 TPM:2.20
1986 A_BomoMG_comp17559_c1_seq1
315bp
FPKM:3.55 TPM:2.80
1987 A_BomoMG_comp17561_c0_seq1
229bp
 PREDICTED:_protein_shuttle_craft_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007399 P nervous system development
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:6.81 TPM:5.38
1988 A_BomoMG_comp17562_c0_seq1
583bp
 Chromatin_assembly_factor_1_subunit_B_[Operophtera_brumata]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006334 P nucleosome assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0031497 P chromatin assembly
GO:0033186 C CAF-1 complex
GO:0042393 F histone binding
FPKM:1.87 TPM:1.48
1989 A_BomoMG_comp17563_c0_seq1
1406bp
 PREDICTED:_proton-coupled_folate_transporter-like_isoform_X2_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:2.24 TPM:1.77
1990 A_BomoMG_comp17564_c0_seq1
422bp
 thiol_reductase_thioredoxin_[Salinisphaera_hydrothermalis]
FPKM:1.35 TPM:1.07
1991 A_BomoMG_comp17565_c0_seq1
741bp
 PREDICTED:_DET1_homolog_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0008150 P biological_process
FPKM:1.72 TPM:1.36
1992 A_BomoMG_comp17565_c0_seq2
366bp
 PREDICTED:_DET1_homolog_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0008150 P biological_process
FPKM:1.78 TPM:1.41
1993 A_BomoMG_comp17566_c0_seq1
317bp
FPKM:3.29 TPM:2.60
1994 A_BomoMG_comp17568_c0_seq1
258bp
FPKM:4.37 TPM:3.45
1995 A_BomoMG_comp17569_c0_seq1
749bp
 PREDICTED:_integrin_alpha-PS2_[Bombyx_mori]
GO:0004872 F signaling receptor activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005925 C focal adhesion
GO:0007155 P cell adhesion
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007160 P cell-matrix adhesion
GO:0007229 P integrin-mediated signaling pathway
GO:0007298 P border follicle cell migration
GO:0007411 P axon guidance
GO:0007414 P axonal defasciculation
GO:0007426 P tracheal outgrowth, open tracheal system
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007431 P salivary gland development
GO:0007435 P salivary gland morphogenesis
GO:0007475 P apposition of dorsal and ventral imaginal disc-derived wing surfaces
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007494 P midgut development
GO:0007608 P sensory perception of smell
GO:0008305 C integrin complex
GO:0008360 P regulation of cell shape
GO:0009925 C basal plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016203 P muscle attachment
GO:0016324 C apical plasma membrane
GO:0016328 C lateral plasma membrane
GO:0016337 P cell-cell adhesion
GO:0016477 P cell migration
GO:0021551 P central nervous system morphogenesis
GO:0030239 P myofibril assembly
GO:0033627 P cell adhesion mediated by integrin
GO:0034446 P substrate adhesion-dependent cell spreading
GO:0035099 P hemocyte migration
GO:0035160 P maintenance of epithelial integrity, open tracheal system
GO:0042383 C sarcolemma
GO:0045185 P maintenance of protein location
GO:0045214 P sarcomere organization
GO:0046982 F protein heterodimerization activity
GO:0050839 F cell adhesion molecule binding
GO:0050840 F extracellular matrix binding
GO:0050896 P response to stimulus
GO:0051492 P regulation of stress fiber assembly
GO:1990430 F extracellular matrix protein binding
FPKM:2.47 TPM:1.95
1996 A_BomoMG_comp17570_c0_seq1
240bp
 PREDICTED:_uncharacterized_protein_LOC105392555_[Plutella_xylostella]
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007286 P spermatid development
GO:0030154 P cell differentiation
GO:0030719 P P granule organization
GO:0033391 C chromatoid body
GO:0043046 P DNA methylation involved in gamete generation
GO:0071546 C pi-body
FPKM:5.21 TPM:4.12
1997 A_BomoMG_comp17571_c0_seq1
232bp
FPKM:3.94 TPM:3.12
1998 A_BomoMG_comp17572_c0_seq1
1503bp
 PREDICTED:_adenine_phosphoribosyltransferase_isoform_X3_[Bombyx_mori]
GO:0003999 F adenine phosphoribosyltransferase activity
GO:0005737 C cytoplasm
GO:0006166 P purine ribonucleoside salvage
GO:0006168 P adenine salvage
GO:0009116 P nucleoside metabolic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0044209 P AMP salvage
FPKM:2.30 TPM:1.82
1999 A_BomoMG_comp17573_c0_seq1
771bp
 PREDICTED:_isoleucine--tRNA_ligase,_mitochondrial_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0002161 F aminoacyl-tRNA editing activity
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004822 F isoleucine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006428 P isoleucyl-tRNA aminoacylation
GO:0006450 P regulation of translational fidelity
GO:0016874 F ligase activity
FPKM:2.08 TPM:1.65
2000 A_BomoMG_comp17575_c0_seq1
624bp
FPKM:3.04 TPM:2.40
2001 A_BomoMG_comp17576_c0_seq1
426bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Amyelois_transitella]
FPKM:2.53 TPM:2.00
2002 A_BomoMG_comp175774_c0_seq1
251bp
 hypothetical_protein_L969DRAFT_95321_[Mixia_osmundae_IAM_14324]
FPKM:5.02 TPM:3.97
2003 A_BomoMG_comp17577_c0_seq1
2027bp
 minichromosome_maintenance_complex_component_7_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005656 C nuclear pre-replicative complex
GO:0005875 C microtubule associated complex
GO:0006260 P DNA replication
GO:0006267 P pre-replicative complex assembly involved in nuclear cell cycle DNA replication
GO:0006270 P DNA replication initiation
GO:0007049 P cell cycle
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0042555 C MCM complex
GO:0043138 F 3'-5' DNA helicase activity
FPKM:2.17 TPM:1.71
2004 A_BomoMG_comp17578_c0_seq1
394bp
 PREDICTED:_phosphorylase_b_kinase_gamma_catalytic_chain,_skeletal_muscle/heart_isoform_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004689 F phosphorylase kinase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0005964 C phosphorylase kinase complex
GO:0005975 P carbohydrate metabolic process
GO:0005977 P glycogen metabolic process
GO:0005978 P glycogen biosynthetic process
GO:0005980 P glycogen catabolic process
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019899 F enzyme binding
GO:0050321 F tau-protein kinase activity
FPKM:3.01 TPM:2.38
2005 A_BomoMG_comp17579_c0_seq1
377bp
 PREDICTED:_kinesin-like_protein_unc-104_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005871 C kinesin complex
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0007018 P microtubule-based movement
GO:0007411 P axon guidance
GO:0007528 P neuromuscular junction development
GO:0008017 F microtubule binding
GO:0008088 P axo-dendritic transport
GO:0008089 P anterograde axonal transport
GO:0008152 P metabolic process
GO:0008345 P larval locomotory behavior
GO:0016188 P synaptic vesicle maturation
GO:0016192 P vesicle-mediated transport
GO:0016887 F ATP hydrolysis activity
GO:0030424 C axon
GO:0030425 C dendrite
GO:0032024 P positive regulation of insulin secretion
GO:0040012 P regulation of locomotion
GO:0045886 P negative regulation of synaptic assembly at neuromuscular junction
GO:0046847 P filopodium assembly
GO:0047496 P vesicle transport along microtubule
GO:0048489 P synaptic vesicle transport
GO:0048490 P anterograde synaptic vesicle transport
GO:0048814 P regulation of dendrite morphogenesis
GO:0051963 P regulation of synapse assembly
GO:1904115 C axon cytoplasm
FPKM:3.40 TPM:2.68
2006 A_BomoMG_comp17579_c1_seq1
519bp
 PREDICTED:_kinesin-like_protein_unc-104_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0007018 P microtubule-based movement
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
GO:0047496 P vesicle transport along microtubule
GO:0048489 P synaptic vesicle transport
FPKM:2.80 TPM:2.21
2007 A_BomoMG_comp17580_c0_seq1
874bp
 hypothetical_protein_KGM_02037_[Danaus_plexippus]
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005768 C endosome
GO:0006810 P transport
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0035091 F phosphatidylinositol binding
FPKM:2.60 TPM:2.06
2008 A_BomoMG_comp17581_c0_seq1
847bp
 Exocyst_complex_component_8_[Papilio_xuthus]
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0015031 P protein transport
FPKM:2.81 TPM:2.22
2009 A_BomoMG_comp17582_c0_seq1
354bp
FPKM:0.00 TPM:0.00
2010 A_BomoMG_comp17582_c0_seq2
441bp
FPKM:2.66 TPM:2.10
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