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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
991 A_BomoFB_comp10241_c0_seq2
751bp
 PREDICTED:_uncharacterized_protein_LOC101737731_[Bombyx_mori]
FPKM:2.42 TPM:2.65
992 A_BomoFB_comp10242_c0_seq1
1364bp
 PREDICTED:_methionine_aminopeptidase_1_isoform_X2_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008235 F metalloexopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0070527 P platelet aggregation
FPKM:2.34 TPM:2.56
993 A_BomoFB_comp10242_c0_seq2
1389bp
 PREDICTED:_methionine_aminopeptidase_1_isoform_X1_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008235 F metalloexopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:4.64 TPM:5.09
994 A_BomoFB_comp102435_c0_seq1
1316bp
 putative_acetyltransferase_ACT18_[Spodoptera_litura]
GO:0003824 F catalytic activity
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
FPKM:2.83 TPM:3.10
995 A_BomoFB_comp10243_c0_seq1
3145bp
 PREDICTED:_serine/arginine_repetitive_matrix_protein_1_isoform_X2_[Bombyx_mori]
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016363 C nuclear matrix
GO:0016607 C nuclear speck
FPKM:20.17 TPM:22.10
996 A_BomoFB_comp10243_c0_seq2
3702bp
 PREDICTED:_serine/arginine_repetitive_matrix_protein_1_isoform_X3_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
FPKM:17.63 TPM:19.32
997 A_BomoFB_comp10243_c0_seq3
3505bp
 PREDICTED:_serine/arginine_repetitive_matrix_protein_1_isoform_X3_[Bombyx_mori]
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016363 C nuclear matrix
GO:0016607 C nuclear speck
FPKM:3.62 TPM:3.97
998 A_BomoFB_comp10244_c1_seq1
242bp
 PREDICTED:_uncharacterized_protein_LOC106143484_[Amyelois_transitella]
FPKM:1.70 TPM:1.86
999 A_BomoFB_comp10244_c1_seq2
273bp
 PREDICTED:_uncharacterized_protein_LOC105398242_[Plutella_xylostella]
FPKM:14.00 TPM:15.34
1000 A_BomoFB_comp102454_c0_seq1
411bp
 PREDICTED:_ATP-dependent_RNA_helicase_DDX42_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008104 P protein localization
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
FPKM:6.66 TPM:7.30
1001 A_BomoFB_comp10245_c0_seq1
666bp
hypothetical_protein_HMPREF9565_01483_[Propionibacterium_acnes_HL053PA2]
FPKM:2.15 TPM:2.35
1002 A_BomoFB_comp10245_c0_seq2
666bp
hypothetical_protein_HMPREF9565_01483_[Propionibacterium_acnes_HL053PA2]
FPKM:2.69 TPM:2.94
1003 A_BomoFB_comp10245_c0_seq3
461bp
hypothetical_protein_LACJE0001_1464_[Lactobacillus_jensenii_269-3]
FPKM:0.78 TPM:0.86
1004 A_BomoFB_comp10246_c0_seq1
2722bp
 PREDICTED:_ABC_transporter_F_family_member_4-like_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:2.70 TPM:2.96
1005 A_BomoFB_comp10246_c0_seq2
2878bp
 PREDICTED:_ABC_transporter_F_family_member_4-like_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:10.31 TPM:11.30
1006 A_BomoFB_comp10246_c1_seq1
363bp
 PREDICTED:_proline_dehydrogenase_1,_mitochondrial_isoform_X2_[Bombyx_mori]
GO:0004657 F proline dehydrogenase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006537 P glutamate biosynthetic process
GO:0006560 P proline metabolic process
GO:0006562 P proline catabolic process
GO:0007626 P locomotory behavior
GO:0010133 P proline catabolic process to glutamate
GO:0016491 F oxidoreductase activity
GO:0042331 P phototaxis
GO:0055114 P obsolete oxidation-reduction process
GO:0071949 F FAD binding
FPKM:0.90 TPM:0.99
1007 A_BomoFB_comp10247_c0_seq1
2000bp
 beta-tubulin_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0008152 P metabolic process
FPKM:228.14 TPM:249.98
1008 A_BomoFB_comp10247_c0_seq2
1054bp
 beta-tubulin_1_[Nilaparvata_lugens]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0008152 P metabolic process
FPKM:163.67 TPM:179.33
1009 A_BomoFB_comp10247_c0_seq3
2016bp
 beta-tubulin_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0008152 P metabolic process
FPKM:150.85 TPM:165.29
1010 A_BomoFB_comp10248_c0_seq1
1784bp
 PREDICTED:_cell_division_cycle_5-like_protein_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
GO:0071987 F WD40-repeat domain binding
GO:0072422 P DNA damage checkpoint signaling
FPKM:7.80 TPM:8.55
1011 A_BomoFB_comp10249_c0_seq1
3554bp
 PREDICTED:_uncharacterized_protein_LOC106720343_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:3.16 TPM:3.46
1012 A_BomoFB_comp10249_c0_seq2
1492bp
 PREDICTED:_uncharacterized_protein_LOC105842764,_partial_[Bombyx_mori]
FPKM:2.75 TPM:3.01
1013 A_BomoFB_comp10249_c0_seq3
848bp
 PREDICTED:_uncharacterized_protein_LOC105842764,_partial_[Bombyx_mori]
FPKM:1.16 TPM:1.27
1014 A_BomoFB_comp10249_c0_seq4
1656bp
 PREDICTED:_uncharacterized_protein_LOC105842764,_partial_[Bombyx_mori]
FPKM:0.80 TPM:0.87
1015 A_BomoFB_comp102506_c0_seq1
974bp
 PREDICTED:_uncharacterized_protein_LOC105380399_[Plutella_xylostella]
FPKM:3.50 TPM:3.84
1016 A_BomoFB_comp10250_c0_seq1
2487bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
FPKM:2.99 TPM:3.28
1017 A_BomoFB_comp10250_c0_seq2
561bp
 endonuclease-reverse_transcriptase_[Danaus_plexippus]
FPKM:2.86 TPM:3.13
1018 A_BomoFB_comp10251_c0_seq1
893bp
 PREDICTED:_glutathione_S-transferase_delta_3_isoform_X1_[Bombyx_mori]
GO:0004364 F glutathione transferase activity
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016829 F lyase activity
GO:0018833 F DDT-dehydrochlorinase activity
FPKM:20.41 TPM:22.36
1019 A_BomoFB_comp102526_c0_seq1
251bp
 chorion_class_A_[Bombyx_mori]
FPKM:0.75 TPM:0.83
1020 A_BomoFB_comp10252_c0_seq1
4031bp
 PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_7-like_isoform_X1_[Bombyx_mori]
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0010216 P maintenance of DNA methylation
GO:0016579 P protein deubiquitination
GO:0016605 C PML body
GO:0016787 F hydrolase activity
GO:0031647 P regulation of protein stability
GO:0036459 F thiol-dependent deubiquitinase
GO:0042803 F protein homodimerization activity
GO:0043065 P positive regulation of apoptotic process
GO:0051090 P regulation of DNA-binding transcription factor activity
FPKM:7.75 TPM:8.49
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