SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/35635
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
961 A_BomoFB_comp10228_c0_seq4
329bp
 PREDICTED:_glutathione_S-transferase_D7-like_[Bombyx_mori]
FPKM:0.00 TPM:0.00
962 A_BomoFB_comp10229_c0_seq1
2526bp
 PREDICTED:_balbiani_ring_protein_3-like_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
FPKM:16.83 TPM:18.44
963 A_BomoFB_comp10229_c0_seq2
2043bp
 PREDICTED:_balbiani_ring_protein_3-like_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
FPKM:0.54 TPM:0.59
964 A_BomoFB_comp10229_c0_seq3
210bp
 PREDICTED:_balbiani_ring_protein_3-like_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005576 C extracellular region
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030414 F peptidase inhibitor activity
FPKM:45.24 TPM:49.57
965 A_BomoFB_comp10230_c0_seq1
758bp
 death-related_protein_[Bombyx_mori]
GO:0006914 P autophagy
GO:0006915 P apoptotic process
GO:0010507 P negative regulation of autophagy
GO:0034198 P cellular response to amino acid starvation
GO:0070513 F death domain binding
GO:0097190 P apoptotic signaling pathway
FPKM:87.34 TPM:95.70
966 A_BomoFB_comp10231_c0_seq1
1211bp
 PREDICTED:_50S_ribosomal_protein_L1_[Papilio_xuthus]
GO:0003723 F RNA binding
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015934 C large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0070124 P mitochondrial translational initiation
GO:0070125 P mitochondrial translational elongation
FPKM:6.97 TPM:7.64
967 A_BomoFB_comp10232_c0_seq1
2505bp
 PREDICTED:_probable_palmitoyltransferase_ZDHHC24_[Papilio_machaon]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0019706 F protein-cysteine S-palmitoyltransferase activity
GO:0046872 F metal ion binding
FPKM:0.30 TPM:0.33
968 A_BomoFB_comp10232_c0_seq2
3537bp
 PREDICTED:_major_facilitator_superfamily_domain-containing_protein_1-like_isoform_X1_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006810 P transport
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:11.48 TPM:12.58
969 A_BomoFB_comp10233_c0_seq1
2096bp
 PREDICTED:_serine/threonine-protein_phosphatase_2A_56_kDa_regulatory_subunit_epsilon_isoform_[Amyelois_transitella]
GO:0000159 C protein phosphatase type 2A complex
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007165 P signal transduction
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
FPKM:2.94 TPM:3.22
970 A_BomoFB_comp10233_c0_seq2
2125bp
 PREDICTED:_serine/threonine-protein_phosphatase_2A_56_kDa_regulatory_subunit_epsilon_isoform_[Amyelois_transitella]
GO:0000159 C protein phosphatase type 2A complex
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007165 P signal transduction
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
FPKM:3.11 TPM:3.40
971 A_BomoFB_comp10233_c0_seq3
3966bp
 Serine/threonine-protein_phosphatase_2A_56_kDa_regulatory_subunit_alpha_isoform_[Papilio_xuthus]
GO:0000159 C protein phosphatase type 2A complex
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007165 P signal transduction
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
FPKM:4.56 TPM:4.99
972 A_BomoFB_comp10233_c0_seq4
4182bp
 Serine/threonine-protein_phosphatase_2A_56_kDa_regulatory_subunit_alpha_isoform_[Papilio_xuthus]
GO:0000159 C protein phosphatase type 2A complex
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007165 P signal transduction
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
FPKM:13.76 TPM:15.08
973 A_BomoFB_comp102347_c0_seq1
920bp
FPKM:2.36 TPM:2.58
974 A_BomoFB_comp10234_c0_seq1
1723bp
 PREDICTED:_mucin-2-like_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:6.70 TPM:7.34
975 A_BomoFB_comp10235_c0_seq1
1190bp
 4-nitrophenylphosphatase_[Bombyx_mori]
GO:0004674 F protein serine/threonine kinase activity
GO:0005829 C cytosol
GO:0006468 P protein phosphorylation
GO:0008152 P metabolic process
GO:0008967 F phosphoglycolate phosphatase activity
GO:0009507 C chloroplast
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
FPKM:3.83 TPM:4.19
976 A_BomoFB_comp10237_c0_seq1
612bp
FPKM:8.73 TPM:9.57
977 A_BomoFB_comp10237_c1_seq1
1187bp
 glutamate_transporter_[Bombyx_mori]
FPKM:9.63 TPM:10.55
978 A_BomoFB_comp10237_c2_seq1
1632bp
FPKM:3.94 TPM:4.31
979 A_BomoFB_comp10237_c2_seq2
1651bp
 PREDICTED:_vesicle-trafficking_protein_SEC22b-B_[Papilio_machaon]
GO:0000139 C Golgi membrane
GO:0000149 F SNARE binding
GO:0005484 F SNAP receptor activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0031201 C SNARE complex
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0048280 P vesicle fusion with Golgi apparatus
FPKM:17.49 TPM:19.17
980 A_BomoFB_comp10237_c3_seq1
506bp
FPKM:0.00 TPM:0.00
981 A_BomoFB_comp10237_c3_seq2
2405bp
 PREDICTED:_iron/zinc_purple_acid_phosphatase-like_protein_isoform_X6_[Plutella_xylostella]
GO:0003993 F acid phosphatase activity
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:34.30 TPM:37.58
982 A_BomoFB_comp10237_c3_seq3
409bp
FPKM:0.00 TPM:0.00
983 A_BomoFB_comp10237_c3_seq4
563bp
 hypothetical_protein_Pmar_PMAR013653_[Perkinsus_marinus_ATCC_50983]
FPKM:4.43 TPM:4.85
984 A_BomoFB_comp10238_c0_seq1
3212bp
 PREDICTED:_supervillin-like_isoform_X3_[Bombyx_mori]
GO:0002102 C podosome
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007010 P cytoskeleton organization
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0030496 C midbody
GO:0032154 C cleavage furrow
GO:0032467 P positive regulation of cytokinesis
GO:0036449 C microtubule minus-end
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0071437 C obsolete invadopodium
FPKM:3.69 TPM:4.04
985 A_BomoFB_comp10238_c0_seq2
7561bp
 PREDICTED:_uncharacterized_protein_LOC101741882_isoform_X4_[Bombyx_mori]
GO:0002102 C podosome
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007010 P cytoskeleton organization
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0030496 C midbody
GO:0032154 C cleavage furrow
GO:0032467 P positive regulation of cytokinesis
GO:0036449 C microtubule minus-end
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0071437 C obsolete invadopodium
FPKM:1.60 TPM:1.75
986 A_BomoFB_comp10238_c0_seq3
7897bp
 PREDICTED:_supervillin-like_isoform_X2_[Bombyx_mori]
GO:0002102 C podosome
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0007010 P cytoskeleton organization
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0030496 C midbody
GO:0032154 C cleavage furrow
GO:0032467 P positive regulation of cytokinesis
GO:0036449 C microtubule minus-end
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0071437 C obsolete invadopodium
FPKM:1.61 TPM:1.77
987 A_BomoFB_comp10239_c0_seq1
1217bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_translational_activator_GCN1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005844 C polysome
GO:0006417 P regulation of translation
GO:0016020 C membrane
GO:0019887 F protein kinase regulator activity
GO:0019901 F protein kinase binding
GO:0033554 P cellular response to stress
GO:0033674 P positive regulation of kinase activity
GO:0034198 P cellular response to amino acid starvation
GO:0036003 P positive regulation of transcription from RNA polymerase II promoter in response to stress
GO:0043022 F ribosome binding
GO:0044822 F RNA binding
GO:0045859 P regulation of protein kinase activity
GO:1990253 P cellular response to leucine starvation
FPKM:5.72 TPM:6.27
988 A_BomoFB_comp102412_c0_seq1
1137bp
 PREDICTED:_zinc_transporter_ZIP3_[Amyelois_transitella]
GO:0000902 P cell morphogenesis
GO:0001701 P in utero embryonic development
GO:0005385 F zinc ion transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006829 P zinc ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030001 P metal ion transport
GO:0043029 P T cell homeostasis
GO:0046873 F metal ion transmembrane transporter activity
GO:0048701 P embryonic cranial skeleton morphogenesis
GO:0055085 P transmembrane transport
GO:0060173 P limb development
GO:0071577 P zinc ion transmembrane transport
FPKM:3.87 TPM:4.24
989 A_BomoFB_comp102418_c0_seq1
539bp
FPKM:3.66 TPM:4.01
990 A_BomoFB_comp10241_c0_seq1
579bp
 PREDICTED:_uncharacterized_protein_LOC101737731_[Bombyx_mori]
FPKM:2.56 TPM:2.81
previous next from show/35635

- SilkBase 1999-2023 -