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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5851 A_BomoFB_comp121002_c0_seq1
508bp
 PREDICTED:_protein_split_ends_isoform_X3_[Amyelois_transitella]
FPKM:3.51 TPM:3.84
5852 A_BomoFB_comp121006_c0_seq1
264bp
FPKM:1.94 TPM:2.13
5853 A_BomoFB_comp121015_c0_seq1
390bp
FPKM:4.19 TPM:4.59
5854 A_BomoFB_comp121026_c0_seq1
471bp
FPKM:2.64 TPM:2.89
5855 A_BomoFB_comp121031_c0_seq1
518bp
FPKM:3.24 TPM:3.55
5856 A_BomoFB_comp121034_c0_seq1
340bp
FPKM:2.76 TPM:3.02
5857 A_BomoFB_comp121036_c0_seq1
333bp
FPKM:3.96 TPM:4.34
5858 A_BomoFB_comp121039_c0_seq1
213bp
FPKM:1.37 TPM:1.51
5859 A_BomoFB_comp12105_c0_seq1
1621bp
 juvenile_hormone_epoxide_hydrolase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0019439 P aromatic compound catabolic process
GO:0031090 C organelle membrane
GO:0033961 F cis-stilbene-oxide hydrolase activity
GO:0043231 C intracellular membrane-bounded organelle
FPKM:157.29 TPM:172.34
5860 A_BomoFB_comp121066_c0_seq1
953bp
 PREDICTED:_MAGUK_p55_subfamily_member_6_[Bombyx_mori]
GO:0004385 F guanylate kinase activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030165 F PDZ domain binding
GO:0046037 P GMP metabolic process
GO:0046710 P GDP metabolic process
GO:0070062 C extracellular exosome
FPKM:3.24 TPM:3.55
5861 A_BomoFB_comp121072_c0_seq1
591bp
 hypothetical_protein_KGM_07999_[Danaus_plexippus]
GO:0000049 F tRNA binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008536 F small GTPase binding
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0031047 P gene silencing by RNA
GO:0035281 P pre-miRNA export from nucleus
GO:0042565 C RNA nuclear export complex
GO:0044822 F RNA binding
GO:0070883 F pre-miRNA binding
GO:0090631 F nucleocytoplasmic carrier activity
GO:1900370 P positive regulation of RNA interference
FPKM:3.59 TPM:3.94
5862 A_BomoFB_comp121085_c0_seq1
3612bp
 PREDICTED:_uncharacterized_protein_LOC101740250_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
FPKM:1.76 TPM:1.93
5863 A_BomoFB_comp121102_c0_seq1
454bp
 PREDICTED:_protein_cereblon-like_isoform_X2_[Bombyx_mori]
GO:0004176 F ATP-dependent peptidase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0031464 C Cul4A-RING E3 ubiquitin ligase complex
GO:0032463 P negative regulation of protein homooligomerization
GO:0034766 P negative regulation of ion transmembrane transport
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0090073 P positive regulation of protein homodimerization activity
FPKM:2.80 TPM:3.07
5864 A_BomoFB_comp121105_c0_seq1
1266bp
 Cytoplasmic_protein_NCK1_[Operophtera_brumata]
GO:0001771 P immunological synapse formation
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005802 C trans-Golgi network
GO:0006417 P regulation of translation
GO:0007015 P actin filament organization
GO:0012506 C vesicle membrane
GO:0016192 P vesicle-mediated transport
GO:0016477 P cell migration
GO:0030032 P lamellipodium assembly
GO:0030838 P positive regulation of actin filament polymerization
GO:0032403 F protein-containing complex binding
GO:0033137 P negative regulation of peptidyl-serine phosphorylation
GO:0036493 P positive regulation of translation in response to endoplasmic reticulum stress
GO:0042102 P positive regulation of T cell proliferation
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048013 P ephrin receptor signaling pathway
GO:0060996 P dendritic spine development
GO:0097110 F scaffold protein binding
GO:0097481 C postsynaptic density
GO:1902237 P positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
GO:1903898 P negative regulation of PERK-mediated unfolded protein response
GO:1903912 P negative regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation
GO:1990441 P negative regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress
FPKM:2.51 TPM:2.75
5865 A_BomoFB_comp121118_c0_seq1
857bp
 PREDICTED:_lipid_phosphate_phosphohydrolase_2-like_isoform_X1_[Bombyx_mori]
GO:0001568 P blood vessel development
GO:0001702 P gastrulation with mouth forming second
GO:0001933 P negative regulation of protein phosphorylation
GO:0005178 F integrin binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006644 P phospholipid metabolic process
GO:0007155 P cell adhesion
GO:0008195 F phosphatidate phosphatase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016337 P cell-cell adhesion
GO:0016787 F hydrolase activity
GO:0030111 P regulation of Wnt signaling pathway
GO:0034109 P homotypic cell-cell adhesion
GO:0042392 F sphingosine-1-phosphate phosphatase activity
GO:0042577 F lipid phosphatase activity
GO:0044328 P canonical Wnt signaling pathway involved in positive regulation of endothelial cell migration
GO:0044329 P canonical Wnt signaling pathway involved in positive regulation of cell-cell adhesion
GO:0044330 P canonical Wnt signaling pathway involved in positive regulation of wound healing
GO:0046839 P phospholipid dephosphorylation
GO:0050731 P positive regulation of peptidyl-tyrosine phosphorylation
GO:0050821 P protein stabilization
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0060020 P Bergmann glial cell differentiation
GO:0060070 P canonical Wnt signaling pathway
GO:0070062 C extracellular exosome
GO:1902068 P regulation of sphingolipid mediated signaling pathway
FPKM:3.22 TPM:3.53
5866 A_BomoFB_comp121121_c0_seq1
869bp
FPKM:1.98 TPM:2.17
5867 A_BomoFB_comp121122_c0_seq1
713bp
 PREDICTED:_dmX-like_protein_2_[Bombyx_mori]
GO:0005615 C extracellular space
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0017137 F small GTPase binding
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
FPKM:3.28 TPM:3.59
5868 A_BomoFB_comp121125_c0_seq1
1710bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101737263_[Bombyx_mori]
GO:0000785 C chromatin
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0010906 P regulation of glucose metabolic process
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0018991 P oviposition
GO:0032259 P methylation
GO:0034770 P histone H4-K20 methylation
GO:0035035 F histone acetyltransferase binding
GO:0042054 F histone methyltransferase activity
GO:0042799 F histone methyltransferase activity (H4-K20 specific)
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042802 F identical protein binding
GO:0043234 C protein-containing complex
GO:0046872 F metal ion binding
GO:0046974 F histone methyltransferase activity (H3-K9 specific)
GO:0048096 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0048477 P oogenesis
GO:0051567 P histone H3-K9 methylation
GO:0051568 P histone H3-K4 methylation
FPKM:2.35 TPM:2.57
5869 A_BomoFB_comp121138_c0_seq1
609bp
FPKM:1.91 TPM:2.09
5870 A_BomoFB_comp12113_c0_seq1
2197bp
 PREDICTED:_xaa-Pro_aminopeptidase_1_[Bombyx_mori]
GO:0004177 F aminopeptidase activity
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0010815 P bradykinin catabolic process
GO:0016787 F hydrolase activity
GO:0030145 F manganese ion binding
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0070006 F metalloaminopeptidase activity
GO:0070062 C extracellular exosome
FPKM:152.11 TPM:166.67
5871 A_BomoFB_comp121146_c0_seq1
337bp
 hypothetical_protein_[Hoeflea_sp._IMCC20628]
FPKM:4.57 TPM:5.00
5872 A_BomoFB_comp121150_c0_seq1
628bp
 hypothetical_protein_KGM_07711_[Danaus_plexippus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:2.44 TPM:2.67
5873 A_BomoFB_comp121161_c0_seq1
778bp
 PREDICTED:_mpv17-like_protein_[Amyelois_transitella]
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:2.83 TPM:3.10
5874 A_BomoFB_comp121166_c0_seq1
563bp
FPKM:3.43 TPM:3.76
5875 A_BomoFB_comp121178_c0_seq1
3012bp
 PREDICTED:_protein_outspread-like_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:2.03 TPM:2.23
5876 A_BomoFB_comp121188_c0_seq1
859bp
 Uncharacterized_protein_OBRU01_05951,_partial_[Operophtera_brumata]
GO:0006810 P transport
GO:0015604 F ABC-type phosphonate transporter activity
GO:0015716 P organic phosphonate transport
GO:0042597 C periplasmic space
GO:0042916 P organic phosphonate transport
GO:0042917 F ABC-type phosphonate transporter activity
GO:0043190 C ATP-binding cassette (ABC) transporter complex
GO:0055085 P transmembrane transport
FPKM:3.13 TPM:3.43
5877 A_BomoFB_comp121209_c0_seq1
210bp
FPKM:0.00 TPM:0.00
5878 A_BomoFB_comp121214_c0_seq1
1075bp
FPKM:2.31 TPM:2.53
5879 A_BomoFB_comp121226_c0_seq1
642bp
 PREDICTED:_glucose_dehydrogenase_[FAD,_quinone]-like_[Plutella_xylostella]
FPKM:3.55 TPM:3.89
5880 A_BomoFB_comp121229_c0_seq1
1677bp
 PREDICTED:_ATPase_family_AAA_domain-containing_protein_2-like_isoform_X4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003682 F chromatin binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0031936 P obsolete negative regulation of chromatin silencing
GO:0042393 F histone binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070062 C extracellular exosome
FPKM:2.43 TPM:2.67
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