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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5821 A_BomoFB_comp120690_c0_seq1
582bp
 PREDICTED:_probable_helicase_senataxin_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0008152 P metabolic process
GO:0009553 P embryo sac development
GO:0009875 P pollen-pistil interaction
GO:0010183 P pollen tube guidance
GO:0016787 F hydrolase activity
FPKM:2.86 TPM:3.13
5822 A_BomoFB_comp120706_c0_seq1
1075bp
FPKM:3.29 TPM:3.60
5823 A_BomoFB_comp120708_c0_seq1
1236bp
 PREDICTED:_NAD_kinase_2,_mitochondrial_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003951 F NAD+ kinase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0006741 P NADP biosynthetic process
GO:0008152 P metabolic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019674 P NAD metabolic process
GO:0042803 F protein homodimerization activity
FPKM:3.30 TPM:3.62
5824 A_BomoFB_comp120741_c0_seq1
369bp
FPKM:2.62 TPM:2.87
5825 A_BomoFB_comp120745_c0_seq1
774bp
FPKM:2.76 TPM:3.02
5826 A_BomoFB_comp120747_c0_seq1
358bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_remodeling_and_spacing_factor_1-like_[Bombyx_mori]
FPKM:4.95 TPM:5.43
5827 A_BomoFB_comp120749_c0_seq1
509bp
 PREDICTED:_nuclear_pore_complex_protein_Nup160-like_[Amyelois_transitella]
GO:0000724 P double-strand break repair via homologous recombination
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007184 P regulation of SMAD protein signal transduction
GO:0015031 P protein transport
GO:0031080 C nuclear pore outer ring
GO:0051028 P mRNA transport
FPKM:4.16 TPM:4.56
5828 A_BomoFB_comp120781_c0_seq1
542bp
 PREDICTED:_RNA-binding_protein_48_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0005654 C nucleoplasm
FPKM:3.02 TPM:3.31
5829 A_BomoFB_comp120789_c0_seq1
587bp
FPKM:3.36 TPM:3.68
5830 A_BomoFB_comp120822_c0_seq1
807bp
 hypothetical_protein_JAAARDRAFT_62317_[Jaapia_argillacea_MUCL_33604]
FPKM:2.87 TPM:3.15
5831 A_BomoFB_comp120832_c0_seq1
891bp
FPKM:1.99 TPM:2.18
5832 A_BomoFB_comp120846_c0_seq1
445bp
 MULTISPECIES:_hypothetical_protein_[Bacteroides]
FPKM:3.11 TPM:3.40
5833 A_BomoFB_comp120861_c0_seq1
1067bp
 PREDICTED:_endoribonuclease_Dcr-1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004525 F ribonuclease III activity
GO:0004530 F deoxyribonuclease I activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006309 P apoptotic DNA fragmentation
GO:0006396 P RNA processing
GO:0016442 C RISC complex
GO:0016787 F hydrolase activity
GO:0016891 F endoribonuclease activity, producing 5'-phosphomonoesters
GO:0030422 P production of siRNA involved in RNA interference
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0046872 F metal ion binding
GO:0070578 C RISC-loading complex
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:1.78 TPM:1.95
5834 A_BomoFB_comp120862_c0_seq1
1210bp
 PREDICTED:_uncharacterized_protein_LOC101742281_[Bombyx_mori]
FPKM:2.11 TPM:2.32
5835 A_BomoFB_comp120875_c0_seq1
227bp
FPKM:0.00 TPM:0.00
5836 A_BomoFB_comp120881_c0_seq1
481bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:4.01 TPM:4.39
5837 A_BomoFB_comp120891_c0_seq1
1865bp
 cytochrome_P450,_family_6,_subfamily_ab,_polypeptide_5_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 F heme binding
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070330 F aromatase activity
FPKM:2.97 TPM:3.25
5838 A_BomoFB_comp120895_c0_seq1
513bp
 SIN3-associated_polypeptide_30_[Operophtera_brumata]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:3.78 TPM:4.15
5839 A_BomoFB_comp120915_c0_seq1
299bp
FPKM:5.55 TPM:6.08
5840 A_BomoFB_comp120937_c0_seq1
610bp
FPKM:2.42 TPM:2.65
5841 A_BomoFB_comp120940_c0_seq1
479bp
 PREDICTED:_carboxypeptidase_D_isoform_X3_[Bombyx_mori]
FPKM:3.85 TPM:4.22
5842 A_BomoFB_comp120946_c0_seq1
531bp
FPKM:3.43 TPM:3.76
5843 A_BomoFB_comp120948_c0_seq1
228bp
 gloverin_4-like_precursor_[Bombyx_mori]
FPKM:2.10 TPM:2.30
5844 A_BomoFB_comp120954_c0_seq1
444bp
 PREDICTED:_RNA_polymerase_II_subunit_A_C-terminal_domain_phosphatase_isoform_X2_[Bombyx_mori]
FPKM:4.37 TPM:4.79
5845 A_BomoFB_comp120961_c0_seq1
1150bp
 Kallikrein-13,_partial_[Calypte_anna]
FPKM:2.25 TPM:2.46
5846 A_BomoFB_comp120962_c0_seq1
346bp
FPKM:4.98 TPM:5.46
5847 A_BomoFB_comp120978_c0_seq1
333bp
 hypothetical_protein_KGM_20953_[Danaus_plexippus]
FPKM:5.41 TPM:5.92
5848 A_BomoFB_comp120983_c0_seq1
515bp
 PREDICTED:_DNA-directed_RNA_polymerase_III_subunit_RPC5_[Bombyx_mori]
GO:0001056 F RNA polymerase III activity
GO:0002376 P immune system process
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005666 C RNA polymerase III complex
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0045087 P innate immune response
GO:0051607 P defense response to virus
FPKM:3.92 TPM:4.30
5849 A_BomoFB_comp120993_c0_seq1
226bp
FPKM:3.25 TPM:3.56
5850 A_BomoFB_comp120_c0_seq1
399bp
 Ankyrin_repeat_domain-containing_protein_50_[Papilio_xuthus]
GO:0005515 F protein binding
GO:0005768 C endosome
GO:0006810 P transport
GO:0015031 P protein transport
GO:1990126 P endocytic recycling
FPKM:0.75 TPM:0.83
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