SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/35635
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5881 A_BomoFB_comp12124_c0_seq1
700bp
FPKM:10.92 TPM:11.97
5882 A_BomoFB_comp121265_c0_seq1
1373bp
 1-phosphatidylinositol-4,5-bisphosphate_phosphodiesterase_beta-4_[Bombyx_mori]
GO:0001580 P detection of chemical stimulus involved in sensory perception of bitter taste
GO:0002385 P mucosal immune response
GO:0004435 F phosphatidylinositol phospholipase C activity
GO:0004629 F phospholipase C activity
GO:0004871 F obsolete signal transducer activity
GO:0005096 F GTPase activator activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0006629 P lipid metabolic process
GO:0006644 P phospholipid metabolic process
GO:0006651 P diacylglycerol biosynthetic process
GO:0007165 P signal transduction
GO:0007601 P visual perception
GO:0007602 P phototransduction
GO:0007608 P sensory perception of smell
GO:0008081 F phosphoric diester hydrolase activity
GO:0008344 P adult locomotory behavior
GO:0008377 P light-induced release of internally sequestered calcium ion
GO:0008654 P phospholipid biosynthetic process
GO:0009649 P entrainment of circadian clock
GO:0016027 C inaD signaling complex
GO:0016028 C rhabdomere
GO:0016042 P lipid catabolic process
GO:0016056 P rhodopsin mediated signaling pathway
GO:0016059 P deactivation of rhodopsin mediated signaling
GO:0016787 F hydrolase activity
GO:0019722 P calcium-mediated signaling
GO:0035556 P intracellular signal transduction
GO:0043052 P thermotaxis
GO:0043153 P entrainment of circadian clock by photoperiod
GO:0043547 P positive regulation of GTPase activity
GO:0045494 P photoreceptor cell maintenance
GO:0046488 P phosphatidylinositol metabolic process
GO:0046673 P negative regulation of compound eye retinal cell programmed cell death
GO:0050896 P response to stimulus
GO:0051482 P positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway
GO:2000370 P positive regulation of clathrin-dependent endocytosis
FPKM:2.37 TPM:2.60
5883 A_BomoFB_comp121270_c0_seq1
960bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:2.45 TPM:2.69
5884 A_BomoFB_comp121307_c0_seq1
510bp
 hypothetical_protein_KGM_11568_[Danaus_plexippus]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016180 P snRNA processing
GO:0032039 C integrator complex
GO:0042795 P snRNA transcription by RNA polymerase II
FPKM:3.15 TPM:3.46
5885 A_BomoFB_comp121322_c0_seq1
1082bp
 PREDICTED:_serine_hydrolase-like_protein_[Plutella_xylostella]
GO:0005739 C mitochondrion
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
FPKM:3.02 TPM:3.31
5886 A_BomoFB_comp12132_c0_seq1
1334bp
 PREDICTED:_mod(mdg4)-heS00531_isoform_X3_[Bombyx_mori]
GO:0000785 C chromatin
GO:0000794 C condensed nuclear chromosome
GO:0001672 P regulation of chromatin assembly or disassembly
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005704 C polytene chromosome band
GO:0005730 C nucleolus
GO:0005886 C plasma membrane
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006915 P apoptotic process
GO:0007060 P male meiosis chromosome segregation
GO:0007141 P male meiosis I
GO:0008195 F phosphatidate phosphatase activity
GO:0008354 P germ cell migration
GO:0010032 P meiotic chromosome condensation
GO:0016311 P dephosphorylation
GO:0016568 P chromatin organization
GO:0031208 F POZ domain binding
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
FPKM:104.20 TPM:114.17
5887 A_BomoFB_comp121336_c0_seq1
399bp
 glycosyl_transferase_[Serratia_marcescens]
FPKM:4.02 TPM:4.40
5888 A_BomoFB_comp121364_c0_seq1
1821bp
 adipose_triglyceride_lipase_[Manduca_sexta]
GO:0004806 F triglyceride lipase activity
GO:0005515 F protein binding
GO:0005811 C lipid droplet
GO:0005886 C plasma membrane
GO:0006629 P lipid metabolic process
GO:0008152 P metabolic process
GO:0010891 P negative regulation of sequestering of triglyceride
GO:0010898 P positive regulation of triglyceride catabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
GO:0019433 P triglyceride catabolic process
FPKM:2.65 TPM:2.91
5889 A_BomoFB_comp121365_c0_seq1
333bp
 conserved_hypothetical_protein_[Perkinsus_marinus_ATCC_50983]
FPKM:2.52 TPM:2.76
5890 A_BomoFB_comp121387_c0_seq1
686bp
FPKM:3.67 TPM:4.02
5891 A_BomoFB_comp121392_c0_seq1
1001bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101740701_[Bombyx_mori]
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005886 C plasma membrane
GO:0007601 P visual perception
GO:0007602 P phototransduction
GO:0007605 P sensory perception of sound
GO:0008104 P protein localization
GO:0009881 F photoreceptor activity
GO:0016020 C membrane
GO:0016027 C inaD signaling complex
GO:0016028 C rhabdomere
GO:0016059 P deactivation of rhodopsin mediated signaling
GO:0017022 F myosin binding
GO:0030159 F signaling receptor complex adaptor activity
GO:0031473 F myosin III binding
GO:0050896 P response to stimulus
GO:0050962 P detection of light stimulus involved in sensory perception
GO:0071482 P cellular response to light stimulus
FPKM:2.59 TPM:2.84
5892 A_BomoFB_comp121411_c0_seq1
238bp
FPKM:0.90 TPM:0.99
5893 A_BomoFB_comp121423_c0_seq1
397bp
 PREDICTED:_zinc_finger_protein_608-like_isoform_X2_[Bombyx_mori]
FPKM:3.80 TPM:4.17
5894 A_BomoFB_comp121434_c0_seq1
461bp
 hypothetical_protein_LOTGIDRAFT_174010_[Lottia_gigantea]
FPKM:3.51 TPM:3.85
5895 A_BomoFB_comp121443_c0_seq1
486bp
FPKM:1.97 TPM:2.16
5896 A_BomoFB_comp121447_c0_seq1
456bp
FPKM:3.18 TPM:3.49
5897 A_BomoFB_comp121451_c0_seq1
553bp
 alpha-glucosidase_[Shuttleworthia_sp._MSX8B]
FPKM:2.49 TPM:2.73
5898 A_BomoFB_comp121459_c0_seq1
521bp
 PREDICTED:_uncharacterized_protein_LOC105681298_[Bombus_impatiens]
FPKM:3.05 TPM:3.34
5899 A_BomoFB_comp121462_c0_seq1
368bp
FPKM:3.52 TPM:3.85
5900 A_BomoFB_comp121497_c0_seq1
789bp
 PREDICTED:_uncharacterized_protein_LOC101742281_[Bombyx_mori]
FPKM:2.15 TPM:2.36
5901 A_BomoFB_comp1214_c0_seq1
269bp
 PREDICTED:_zinc_finger_protein_426-like_isoform_X2_[Bombyx_mori]
FPKM:1.22 TPM:1.34
5902 A_BomoFB_comp121509_c0_seq1
720bp
 formate_dehydrogenase_subunit_gamma_[Pseudogulbenkiania_sp._MAI-1]
FPKM:1.82 TPM:1.99
5903 A_BomoFB_comp121518_c0_seq1
607bp
FPKM:2.43 TPM:2.67
5904 A_BomoFB_comp121529_c0_seq1
335bp
FPKM:5.34 TPM:5.85
5905 A_BomoFB_comp12153_c0_seq1
666bp
 PREDICTED:_uncharacterized_protein_LOC105391824_[Plutella_xylostella]
FPKM:117.46 TPM:128.70
5906 A_BomoFB_comp12154_c0_seq1
1366bp
 serine_protease_HP21_precursor_[Bombyx_mori]
GO:0004252 F serine-type endopeptidase activity
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0007275 P multicellular organism development
GO:0007311 P maternal specification of dorsal/ventral axis, oocyte, germ-line encoded
GO:0008063 P Toll signaling pathway
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0009950 P dorsal/ventral axis specification
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
FPKM:178.34 TPM:195.42
5907 A_BomoFB_comp121555_c0_seq1
639bp
 DNA_polymerase_delta_small_subunit_[Operophtera_brumata]
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005634 C nucleus
GO:0005875 C microtubule associated complex
GO:0006260 P DNA replication
GO:0006974 P cellular response to DNA damage stimulus
GO:0007052 P mitotic spindle organization
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0043625 C delta DNA polymerase complex
GO:0071897 P DNA biosynthetic process
FPKM:2.74 TPM:3.00
5908 A_BomoFB_comp12156_c0_seq1
602bp
 ATPase_inhibitor-like_protein_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0006783 P heme biosynthetic process
GO:0009396 P folic acid-containing compound biosynthetic process
GO:0030272 F 5-formyltetrahydrofolate cyclo-ligase activity
GO:0032780 P negative regulation of ATP-dependent activity
GO:0035999 P tetrahydrofolate interconversion
GO:0042030 F ATPase inhibitor activity
GO:0051117 F ATPase binding
FPKM:170.13 TPM:186.41
5909 A_BomoFB_comp121571_c0_seq1
426bp
 PREDICTED:_laminin_subunit_alpha-2_isoform_X9_[Cavia_porcellus]
FPKM:2.90 TPM:3.18
5910 A_BomoFB_comp121585_c0_seq1
445bp
 PREDICTED:_protein_fem-1_homolog_CG6966_isoform_X2_[Bombyx_mori]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005575 C cellular_component
GO:0016567 P protein ubiquitination
GO:0051438 P regulation of ubiquitin-protein transferase activity
FPKM:4.35 TPM:4.77
previous next from show/35635

- SilkBase 1999-2023 -