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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5791 A_BomoFB_comp120462_c0_seq1
527bp
 PREDICTED:_vacuolar_protein_sorting-associated_protein_13D_[Papilio_xuthus]
GO:0005622 C intracellular anatomical structure
GO:0006623 P protein targeting to vacuole
GO:0019898 C extrinsic component of membrane
GO:0045053 P protein retention in Golgi apparatus
GO:0070062 C extracellular exosome
FPKM:3.79 TPM:4.15
5792 A_BomoFB_comp120470_c0_seq1
1290bp
 PREDICTED:_uncharacterized_protein_LOC101740299_[Bombyx_mori]
FPKM:2.35 TPM:2.58
5793 A_BomoFB_comp120481_c0_seq1
910bp
 PREDICTED:_alpha-sarcoglycan_isoform_X1_[Bombyx_mori]
FPKM:3.44 TPM:3.76
5794 A_BomoFB_comp120484_c0_seq1
639bp
 hypothetical_protein_KGM_20167_[Danaus_plexippus]
GO:0000278 P mitotic cell cycle
GO:0000790 C chromatin
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0031647 P regulation of protein stability
GO:0036459 F thiol-dependent deubiquitinase
GO:0042393 F histone binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
FPKM:2.38 TPM:2.61
5795 A_BomoFB_comp120490_c0_seq1
420bp
FPKM:2.06 TPM:2.26
5796 A_BomoFB_comp120494_c0_seq1
1594bp
 PREDICTED:_uncharacterized_protein_LOC106136946_[Amyelois_transitella]
GO:0004871 F obsolete signal transducer activity
GO:0006629 P lipid metabolic process
GO:0007165 P signal transduction
GO:0008081 F phosphoric diester hydrolase activity
GO:0016042 P lipid catabolic process
GO:0016787 F hydrolase activity
FPKM:2.73 TPM:2.99
5797 A_BomoFB_comp120495_c0_seq1
585bp
 PREDICTED:_V-type_proton_ATPase_116_kDa_subunit_a_isoform_1-like_[Bombyx_mori]
GO:0000220 C vacuolar proton-transporting V-type ATPase, V0 domain
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006810 P transport
GO:0006811 P ion transport
GO:0007035 P vacuolar acidification
GO:0008150 P biological_process
GO:0015078 F proton transmembrane transporter activity
GO:0015986 P ATP synthesis coupled proton transport
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016471 C vacuolar proton-transporting V-type ATPase complex
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0033179 C proton-transporting V-type ATPase, V0 domain
GO:0042470 C melanosome
GO:0043195 C terminal bouton
GO:0046961 F proton-transporting ATPase activity, rotational mechanism
GO:0051117 F ATPase binding
GO:0070072 P vacuolar proton-transporting V-type ATPase complex assembly
FPKM:3.38 TPM:3.70
5798 A_BomoFB_comp120496_c0_seq1
533bp
FPKM:3.10 TPM:3.40
5799 A_BomoFB_comp120497_c0_seq1
630bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:3.77 TPM:4.13
5800 A_BomoFB_comp120499_c0_seq1
663bp
 hypothetical_protein_PTSG_01312_[Salpingoeca_rosetta]
FPKM:3.28 TPM:3.59
5801 A_BomoFB_comp1204_c0_seq1
330bp
 PREDICTED:_WD_repeat-containing_protein_81_isoform_X3_[Bombyx_mori]
GO:0000132 P establishment of mitotic spindle orientation
GO:0000776 C kinetochore
GO:0005739 C mitochondrion
GO:0005813 C centrosome
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0005938 C cell cortex
GO:0007097 P nuclear migration
GO:0007281 P germ cell development
GO:0008017 F microtubule binding
GO:0008090 P retrograde axonal transport
GO:0010923 P negative regulation of phosphatase activity
GO:0022008 P neurogenesis
GO:0031023 P microtubule organizing center organization
GO:0045502 F dynein complex binding
GO:0047496 P vesicle transport along microtubule
GO:1904115 C axon cytoplasm
GO:2000574 P obsolete regulation of microtubule motor activity
FPKM:1.11 TPM:1.22
5802 A_BomoFB_comp120500_c0_seq1
538bp
FPKM:2.60 TPM:2.85
5803 A_BomoFB_comp120521_c0_seq1
1441bp
 PREDICTED:_probable_glutamate--tRNA_ligase,_mitochondrial_[Papilio_machaon]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004818 F glutamate-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006424 P glutamyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0043039 P tRNA aminoacylation
GO:0070127 P tRNA aminoacylation for mitochondrial protein translation
FPKM:2.98 TPM:3.26
5804 A_BomoFB_comp120528_c0_seq1
895bp
 dnaJ_homolog_subfamily_C_member_28_[Bombyx_mori]
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0005515 F protein binding
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0017119 C Golgi transport complex
GO:0048213 P Golgi vesicle prefusion complex stabilization
FPKM:2.59 TPM:2.84
5805 A_BomoFB_comp120538_c0_seq1
1468bp
 PREDICTED:_neutral_ceramidase_[Amyelois_transitella]
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0007268 P chemical synaptic transmission
GO:0016079 P synaptic vesicle exocytosis
GO:0016787 F hydrolase activity
GO:0017040 F N-acylsphingosine amidohydrolase activity
GO:0031629 P synaptic vesicle fusion to presynaptic active zone membrane
GO:0035187 P hatching behavior
GO:0045202 C synapse
GO:0045494 P photoreceptor cell maintenance
GO:0046514 P ceramide catabolic process
GO:0098793 C presynapse
FPKM:3.04 TPM:3.33
5806 A_BomoFB_comp120541_c0_seq1
461bp
 Uncharacterized_protein_OBRU01_02600_[Operophtera_brumata]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016363 C nuclear matrix
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:4.30 TPM:4.71
5807 A_BomoFB_comp120557_c0_seq1
448bp
FPKM:1.02 TPM:1.12
5808 A_BomoFB_comp120563_c0_seq1
576bp
 PREDICTED:_rho_guanine_nucleotide_exchange_factor_10_isoform_X3_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0019894 F kinesin binding
GO:0022011 P myelination in peripheral nervous system
GO:0035023 P regulation of Rho protein signal transduction
GO:0051298 P centrosome duplication
GO:0051496 P positive regulation of stress fiber assembly
GO:0090307 P mitotic spindle assembly
GO:0090630 P activation of GTPase activity
FPKM:4.56 TPM:5.00
5809 A_BomoFB_comp120566_c0_seq1
269bp
 cytochrome_P450_[Mycobacterium_avium_subsp._paratuberculosis_S397]
FPKM:0.61 TPM:0.67
5810 A_BomoFB_comp120568_c0_seq1
282bp
 DNA_methyltransferase_[Oscillatoria_nigro-viridis]
FPKM:1.08 TPM:1.18
5811 A_BomoFB_comp120585_c0_seq1
1683bp
FPKM:1.56 TPM:1.71
5812 A_BomoFB_comp120595_c0_seq1
1190bp
FPKM:1.40 TPM:1.54
5813 A_BomoFB_comp1205_c0_seq1
451bp
FPKM:1.42 TPM:1.55
5814 A_BomoFB_comp120643_c0_seq1
728bp
 PREDICTED:_uncharacterized_protein_LOC101744850_isoform_X2_[Bombyx_mori]
FPKM:3.29 TPM:3.60
5815 A_BomoFB_comp120647_c0_seq1
490bp
FPKM:1.77 TPM:1.94
5816 A_BomoFB_comp120649_c0_seq1
228bp
FPKM:11.54 TPM:12.64
5817 A_BomoFB_comp120656_c0_seq1
602bp
 PREDICTED:_uncharacterized_protein_LOC106136206_[Amyelois_transitella]
FPKM:2.59 TPM:2.84
5818 A_BomoFB_comp120666_c0_seq1
232bp
 endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]
FPKM:0.00 TPM:0.00
5819 A_BomoFB_comp120683_c0_seq1
1262bp
FPKM:2.77 TPM:3.03
5820 A_BomoFB_comp120684_c0_seq1
1244bp
 PREDICTED:_uncharacterized_protein_LOC101739889_isoform_X1_[Bombyx_mori]
FPKM:2.61 TPM:2.86
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