SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp120861_c0_seq1
Scaffold_idBomo_Chr11
NCBI non-redundant
(nr)		PREDICTED:_endoribonuclease_Dcr-1_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004386 F helicase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004525 F ribonuclease III activity
GO:0004530 F deoxyribonuclease I activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006309 P apoptotic DNA fragmentation
GO:0006396 P RNA processing
GO:0016442 C RISC complex
GO:0016787 F hydrolase activity
GO:0016891 F endoribonuclease activity, producing 5'-phosphomonoesters
GO:0030422 P production of siRNA involved in RNA interference
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0046872 F metal ion binding
GO:0070578 C RISC-loading complex
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:1.78 TPM:1.95
ORF EntryO_BomoFB20251_3prime_partial:A_BomoFB_comp120861_c0_seq1
Sequence
(Nucleotide)
ATATTTTCGCTCTCTAATGATTTATCTTCAGCAACTATATCCTGTTCTAGGTCTGTTTTT
GTATCTTTCAAAGATCCAATGTCACTGTCGCAAGTAATTTCATTCGGTGAATCAGTTTGA
GAGTGTCTCATATCTTTTTCTGACCTTTCATTATCATGTTTATCTTCTTCTATCAGCATA
TCTTTCAAATTACATGAGTCTCTTTTGTTTGAATCCTCAGAGTTATCTGCCTGTTTGTCA
TTATGAATGTCTTCAGATTTTTTGTGCGATCCAAAGAGAGGATATGTCAACGAAAGTATT
CGGGGTCTTTTTGATTCTTCGCTATCTTTGTAAACTTGCATAATATATTTCAAATTCTCG
TCGGTCACTATTAAATGACAGCTATCAATTATTAGAACATTAATATTCGCCATTGATATT
ATTCCCTCTTCTAGAATTCGTTTTAAAACTACTGAAGTGCAGACCAAAACTTCTTTCTTA
TCAAGTTCCGCGTACCAATCATACACATCATCGTATTTCTCAGCCTCACACAACGACAAG
TCGGTCATAATCCTCAGATCGTAGGCGGTGCATTTTATACGATCCTCTCTTGTCACGTGC
ACTGATCTCTGCTTATTATCATAGAGCGACCCTCGTATCTTATAAGCTTCTTCATAGACC
AGCCTGGTTGCAATGAAATTTGAGTATTCCACAGCAAGGGTGTTACGTTCAGATGCAATT
GCAGCGAGACGAGCACCCCCTTCAGCTGTGGTAAACTTGTAAATTGATGGCTCCACCATA
GTTACTATTTCGTTTCCTTTAAATATAATTCACGACATAATATACCATTTTTAACAGTTA
AAAATAATGAAATAGTATCAAATGCAATTAAATTTGTAATAAACAAAACGTATTTACGAA
GTTATTATTTATATTACAGCGATTATAGAAATTATTTCTAGGTAAACGTTAATTTTATGT
ACAAAAGTAAATTATGTGCATTTGGGTTTTATCCGAGAAACCGTTTATGCATTAATATAT
TTAATTAATATCATGCAACTCTCCTTTTGCACAACATTTGCCATTTG
(1067 bp)

- SilkBase 1999-2023 -