SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/35635
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5521 A_BomoFB_comp114982_c0_seq1
493bp
 PREDICTED:_sterol_O-acyltransferase_1_[Amyelois_transitella]
GO:0000062 F fatty-acyl-CoA binding
GO:0004772 F sterol O-acyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005903 C brush border
GO:0006629 P lipid metabolic process
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008374 F O-acyltransferase activity
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0033344 P cholesterol efflux
GO:0034379 P very-low-density lipoprotein particle assembly
GO:0034435 P cholesterol esterification
GO:0034736 F cholesterol O-acyltransferase activity
GO:0042632 P cholesterol homeostasis
FPKM:2.98 TPM:3.26
5522 A_BomoFB_comp114992_c0_seq1
317bp
 hypothetical_protein_JL09_g4314_[Pichia_kudriavzevii]
FPKM:0.40 TPM:0.44
5523 A_BomoFB_comp114998_c0_seq1
1034bp
 Uncharacterized_protein_OBRU01_11137_[Operophtera_brumata]
FPKM:3.19 TPM:3.50
5524 A_BomoFB_comp11502_c0_seq1
776bp
FPKM:132.02 TPM:144.66
5525 A_BomoFB_comp11503_c0_seq1
737bp
 gustatory_receptor_61,_partial_[Athetis_dissimilis]
FPKM:140.63 TPM:154.09
5526 A_BomoFB_comp11503_c1_seq1
706bp
FPKM:3.01 TPM:3.30
5527 A_BomoFB_comp115046_c0_seq1
495bp
 PREDICTED:_uncharacterized_protein_LOC105389556_[Plutella_xylostella]
FPKM:3.48 TPM:3.81
5528 A_BomoFB_comp115065_c0_seq1
1348bp
 PREDICTED:_serine/threonine-protein_kinase_10_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0023014 P signal transduction
GO:0042801 F obsolete polo kinase kinase activity
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0046777 P protein autophosphorylation
GO:0070062 C extracellular exosome
GO:0071593 P lymphocyte aggregation
GO:2000401 P regulation of lymphocyte migration
FPKM:2.80 TPM:3.06
5529 A_BomoFB_comp115076_c0_seq1
1432bp
 PREDICTED:_sodium-independent_sulfate_anion_transporter-like_isoform_X2_[Bombyx_mori]
GO:0005254 F chloride channel activity
GO:0005654 C nucleoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0008271 F secondary active sulfate transmembrane transporter activity
GO:0008272 P sulfate transport
GO:0008509 F anion transmembrane transporter activity
GO:0015106 F bicarbonate transmembrane transporter activity
GO:0015116 F sulfate transmembrane transporter activity
GO:0015301 F anion:anion antiporter activity
GO:0015701 P bicarbonate transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019531 F oxalate transmembrane transporter activity
GO:0019532 P oxalate transport
GO:0042391 P regulation of membrane potential
GO:0043231 C intracellular membrane-bounded organelle
GO:0051453 P regulation of intracellular pH
GO:0055085 P transmembrane transport
GO:0070062 C extracellular exosome
GO:1902358 P sulfate transmembrane transport
GO:1902476 P chloride transmembrane transport
FPKM:2.48 TPM:2.71
5530 A_BomoFB_comp11507_c0_seq1
1681bp
 PREDICTED:_venom_serine_carboxypeptidase-like_[Papilio_xuthus]
GO:0004180 F carboxypeptidase activity
GO:0004185 F serine-type carboxypeptidase activity
GO:0005576 C extracellular region
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0016787 F hydrolase activity
FPKM:196.62 TPM:215.44
5531 A_BomoFB_comp115111_c0_seq1
996bp
 PREDICTED:_uncharacterized_protein_C4B3.18_[Amyelois_transitella]
GO:0004632 F phosphopantothenate--cysteine ligase activity
GO:0005829 C cytosol
GO:0009108 P obsolete coenzyme biosynthetic process
GO:0015937 P coenzyme A biosynthetic process
GO:0016874 F ligase activity
GO:0070062 C extracellular exosome
FPKM:2.40 TPM:2.63
5532 A_BomoFB_comp115113_c0_seq1
346bp
 hypothetical_protein_M514_27992_[Trichuris_suis]
FPKM:5.98 TPM:6.55
5533 A_BomoFB_comp11512_c0_seq1
2766bp
 PREDICTED:_uncharacterized_protein_LOC106133714_[Amyelois_transitella]
FPKM:182.04 TPM:199.47
5534 A_BomoFB_comp115141_c0_seq1
614bp
 putative_histone-lysine_N-methyltransferase,_H3_lysine-9_specific_[Danaus_plexippus]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0002039 F p53 binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006275 P regulation of DNA replication
GO:0006306 P DNA methylation
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0009267 P cellular response to starvation
GO:0016279 F protein-lysine N-methyltransferase activity
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0018027 P peptidyl-lysine dimethylation
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0046872 F metal ion binding
GO:0046974 F histone methyltransferase activity (H3-K9 specific)
GO:0046976 F histone methyltransferase activity (H3-K27 specific)
GO:0051567 P histone H3-K9 methylation
GO:0070734 P histone H3-K27 methylation
GO:0070742 F C2H2 zinc finger domain binding
GO:1901796 P regulation of signal transduction by p53 class mediator
GO:1990841 F promoter-specific chromatin binding
FPKM:3.28 TPM:3.59
5535 A_BomoFB_comp115144_c0_seq1
1496bp
 PREDICTED:_probable_DNA_mismatch_repair_protein_Msh6_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000400 F four-way junction DNA binding
GO:0000710 P meiotic mismatch repair
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0005524 F ATP binding
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006301 P postreplication repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007131 P reciprocal meiotic recombination
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0009411 P response to UV
GO:0030983 F mismatched DNA binding
GO:0032137 F guanine/thymine mispair binding
GO:0032138 F single base insertion or deletion binding
GO:0032301 C MutSalpha complex
GO:0043570 P maintenance of DNA repeat elements
GO:0045910 P negative regulation of DNA recombination
FPKM:1.94 TPM:2.13
5536 A_BomoFB_comp115147_c0_seq1
468bp
 aspartyl/glutamyl-tRNA_amidotransferase_subunit_A_[Algoriphagus_marincola]
FPKM:3.05 TPM:3.34
5537 A_BomoFB_comp115149_c0_seq1
750bp
 putative_cuticle_protein_CPH41_[Bombyx_mori]
GO:0000070 P mitotic sister chromatid segregation
GO:0000278 P mitotic cell cycle
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000940 C outer kinetochore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0005819 C spindle
GO:0005828 C kinetochore microtubule
GO:0005856 C cytoskeleton
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007030 P Golgi organization
GO:0007049 P cell cycle
GO:0007059 P chromosome segregation
GO:0007060 P male meiosis chromosome segregation
GO:0007067 P mitotic cell cycle
GO:0007094 P mitotic spindle assembly checkpoint signaling
GO:0007107 P membrane addition at site of cytokinesis
GO:0007112 P male meiosis cytokinesis
GO:0017137 F small GTPase binding
GO:0022008 P neurogenesis
GO:0036063 C acroblast
GO:0036090 P cleavage furrow ingression
GO:0048193 P Golgi vesicle transport
GO:0051233 C spindle midzone
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0070939 C Dsl1/NZR complex
GO:1990423 C RZZ complex
FPKM:3.45 TPM:3.78
5538 A_BomoFB_comp115154_c0_seq1
229bp
FPKM:5.16 TPM:5.65
5539 A_BomoFB_comp1151_c0_seq1
482bp
FPKM:0.73 TPM:0.80
5540 A_BomoFB_comp115207_c0_seq1
898bp
 PREDICTED:_proteasome_assembly_chaperone_2_[Amyelois_transitella]
GO:0000502 C proteasome complex
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0043248 P proteasome assembly
FPKM:3.11 TPM:3.41
5541 A_BomoFB_comp115211_c0_seq1
391bp
 Protein_sprint_[Papilio_xuthus]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005938 C cell cortex
GO:0006897 P endocytosis
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007298 P border follicle cell migration
GO:0017016 F small GTPase binding
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0019901 F protein kinase binding
GO:0030139 C endocytic vesicle
GO:0030971 F receptor tyrosine kinase binding
GO:0032483 P regulation of Rab protein signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0048675 P axon extension
FPKM:4.69 TPM:5.14
5542 A_BomoFB_comp115224_c0_seq1
1394bp
 PREDICTED:_TBC1_domain_family_member_5_homolog_A-like_[Papilio_polytes]
FPKM:3.09 TPM:3.39
5543 A_BomoFB_comp115235_c0_seq1
887bp
 PREDICTED:_uncharacterized_protein_LOC106140236_[Amyelois_transitella]
FPKM:2.85 TPM:3.13
5544 A_BomoFB_comp11527_c0_seq1
4069bp
 6-phosphogluconate_dehydrogenase_[Bombyx_mori]
GO:0004616 F phosphogluconate dehydrogenase (decarboxylating) activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006098 P pentose-phosphate shunt
GO:0009051 P pentose-phosphate shunt, oxidative branch
GO:0016491 F oxidoreductase activity
GO:0019322 P pentose biosynthetic process
GO:0019521 P D-gluconate metabolic process
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
FPKM:85.34 TPM:93.51
5545 A_BomoFB_comp115294_c0_seq1
462bp
 hypothetical_protein_[Mesorhizobium_sp._1M-11]
FPKM:2.72 TPM:2.98
5546 A_BomoFB_comp115298_c0_seq1
225bp
 SusC/RagA_family_TonB-linked_outer_membrane_protein_[Flavobacterium_sp._Fl]
FPKM:0.00 TPM:0.00
5547 A_BomoFB_comp115305_c0_seq1
269bp
 PREDICTED:_protein_sel-1_homolog_1_isoform_X2_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0007219 P Notch signaling pathway
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030970 P retrograde protein transport, ER to cytosol
GO:0034976 P response to endoplasmic reticulum stress
GO:0036503 P ERAD pathway
GO:0036513 C Derlin-1 retrotranslocation complex
FPKM:7.96 TPM:8.72
5548 A_BomoFB_comp115306_c0_seq1
658bp
FPKM:3.66 TPM:4.01
5549 A_BomoFB_comp115309_c0_seq1
446bp
 PREDICTED:_tyrosine-protein_phosphatase_69D_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0004728 F obsolete signal transducer, downstream of receptor, with protein tyrosine phosphatase activity
GO:0005001 F transmembrane receptor protein tyrosine phosphatase activity
GO:0005886 C plasma membrane
GO:0006470 P protein dephosphorylation
GO:0007155 P cell adhesion
GO:0007411 P axon guidance
GO:0007414 P axonal defasciculation
GO:0007415 P defasciculation of motor neuron axon
GO:0008045 P motor neuron axon guidance
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0023014 P signal transduction
GO:0030424 C axon
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0046331 P lateral inhibition
GO:0048813 P dendrite morphogenesis
GO:0097155 P fasciculation of sensory neuron axon
FPKM:2.89 TPM:3.17
5550 A_BomoFB_comp11532_c0_seq1
2546bp
 PREDICTED:_uncharacterized_protein_LOC106136069_isoform_X2_[Amyelois_transitella]
FPKM:187.09 TPM:205.00
previous next from show/35635

- SilkBase 1999-2023 -