SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/35635
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5491 A_BomoFB_comp114595_c0_seq1
1642bp
 PREDICTED:_serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_gamma-like_[Papilio_polytes]
GO:0000226 P microtubule cytoskeleton organization
GO:0001782 P B cell homeostasis
GO:0002759 P regulation of antimicrobial humoral response
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005819 C spindle
GO:0030865 P cortical cytoskeleton organization
GO:0032147 P activation of protein kinase activity
GO:0043029 P T cell homeostasis
GO:0045579 P positive regulation of B cell differentiation
GO:0046872 F metal ion binding
GO:0048536 P spleen development
GO:0050864 P regulation of B cell activation
GO:0051900 P regulation of mitochondrial depolarization
FPKM:2.72 TPM:2.98
5492 A_BomoFB_comp114604_c0_seq1
822bp
 PREDICTED:_enhancer_of_mRNA-decapping_protein_4-like,_partial_[Bombyx_mori]
GO:0000932 C P-body
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
FPKM:3.06 TPM:3.35
5493 A_BomoFB_comp114605_c0_seq1
597bp
 PREDICTED:_lysosomal_thioesterase_PPT2,_partial_[Meleagris_gallopavo]
FPKM:2.23 TPM:2.44
5494 A_BomoFB_comp114657_c0_seq1
657bp
 Uncharacterized_protein_OBRU01_02243_[Operophtera_brumata]
FPKM:2.75 TPM:3.01
5495 A_BomoFB_comp114673_c0_seq1
1979bp
 PREDICTED:_sorting_nexin-29-like_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0035091 F phosphatidylinositol binding
GO:0070062 C extracellular exosome
FPKM:2.66 TPM:2.92
5496 A_BomoFB_comp114676_c0_seq1
250bp
FPKM:2.29 TPM:2.51
5497 A_BomoFB_comp114682_c0_seq1
429bp
 PREDICTED:_uncharacterized_protein_LOC101745679_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0048208 P COPII vesicle coating
FPKM:3.09 TPM:3.38
5498 A_BomoFB_comp1147065_c0_seq1
213bp
 PREDICTED:_uncharacterized_protein_LOC105842954_[Bombyx_mori]
FPKM:2.75 TPM:3.01
5499 A_BomoFB_comp114718_c0_seq1
511bp
FPKM:4.14 TPM:4.53
5500 A_BomoFB_comp114722_c0_seq1
1220bp
 PREDICTED:_receptor-mediated_endocytosis_protein_6_homolog_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005829 C cytosol
GO:0006897 P endocytosis
GO:0007165 P signal transduction
GO:0016020 C membrane
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0032483 P regulation of Rab protein signal transduction
GO:0032794 F GTPase activating protein binding
GO:0043087 P regulation of GTPase activity
GO:0043547 P positive regulation of GTPase activity
GO:0051223 P regulation of protein transport
FPKM:2.41 TPM:2.64
5501 A_BomoFB_comp114728_c0_seq1
772bp
FPKM:1.57 TPM:1.72
5502 A_BomoFB_comp114734_c0_seq1
213bp
FPKM:1.37 TPM:1.51
5503 A_BomoFB_comp114735_c0_seq1
852bp
 PREDICTED:_3-ketodihydrosphingosine_reductase_[Papilio_machaon]
GO:0005615 C extracellular space
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006665 P sphingolipid metabolic process
GO:0006666 P 3-keto-sphinganine metabolic process
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0030148 P sphingolipid biosynthetic process
GO:0047560 F 3-dehydrosphinganine reductase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:3.16 TPM:3.47
5504 A_BomoFB_comp11475_c0_seq1
1515bp
 H+_transporting_ATP_synthase_gamma_subunit_[Bombyx_mori]
GO:0000275 C mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005811 C lipid droplet
GO:0006754 P ATP biosynthetic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006909 P phagocytosis
GO:0015986 P ATP synthesis coupled proton transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0045261 C proton-transporting ATP synthase complex, catalytic core F(1)
GO:0046933 F proton-transporting ATP synthase activity, rotational mechanism
GO:0046961 F proton-transporting ATPase activity, rotational mechanism
FPKM:215.45 TPM:236.07
5505 A_BomoFB_comp114762_c0_seq1
327bp
 PREDICTED:_uncharacterized_protein_LOC106137937_[Amyelois_transitella]
FPKM:6.38 TPM:6.99
5506 A_BomoFB_comp114763_c0_seq1
2407bp
 PREDICTED:_uncharacterized_protein_LOC101740603_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005109 F frizzled binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005923 C bicellular tight junction
GO:0007165 P signal transduction
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0032947 F molecular adaptor activity
GO:0043507 P positive regulation of JUN kinase activity
GO:0046328 P regulation of JNK cascade
FPKM:2.51 TPM:2.76
5507 A_BomoFB_comp114792_c0_seq1
1034bp
 PREDICTED:_ATP-dependent_(S)-NAD(P)H-hydrate_dehydratase_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0008152 P metabolic process
GO:0016829 F lyase activity
GO:0047453 F ATP-dependent NAD(P)H-hydrate dehydratase activity
GO:0052855 F ADP-dependent NAD(P)H-hydrate dehydratase activity
FPKM:2.42 TPM:2.66
5508 A_BomoFB_comp114800_c0_seq1
359bp
 hypothetical_protein_[Paenibacillus_sp._TCA20]
FPKM:3.69 TPM:4.05
5509 A_BomoFB_comp114825_c0_seq1
973bp
 PREDICTED:_uncharacterized_protein_LOC101746312_isoform_X2_[Bombyx_mori]
FPKM:2.68 TPM:2.94
5510 A_BomoFB_comp1148479_c0_seq1
203bp
hCG2040996,_partial_[Homo_sapiens]
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
FPKM:0.00 TPM:0.00
5511 A_BomoFB_comp114871_c0_seq1
577bp
 survivin-1_[Bombyx_mori]
FPKM:4.41 TPM:4.83
5512 A_BomoFB_comp114873_c0_seq1
1126bp
 PREDICTED:_probable_serine_hydrolase_[Amyelois_transitella]
GO:0005575 C cellular_component
GO:0007275 P multicellular organism development
GO:0007586 P digestion
GO:0008152 P metabolic process
GO:0009636 P response to toxic substance
GO:0016787 F hydrolase activity
GO:0017171 F serine hydrolase activity
GO:0019233 P sensory perception of pain
GO:0052689 F carboxylic ester hydrolase activity
FPKM:2.53 TPM:2.78
5513 A_BomoFB_comp1148_c0_seq1
801bp
 PREDICTED:_monocarboxylate_transporter_4-like_[Amyelois_transitella]
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008028 F monocarboxylic acid transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015718 P monocarboxylic acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:1.05 TPM:1.16
5514 A_BomoFB_comp1149057_c0_seq1
229bp
 PREDICTED:_cytoplasmic_dynein_2_heavy_chain_1-like,_partial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0005930 C axoneme
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007018 P microtubule-based movement
GO:0007030 P Golgi organization
GO:0007275 P multicellular organism development
GO:0007368 P determination of left/right symmetry
GO:0007507 P heart development
GO:0008105 P protein localization
GO:0009953 P dorsal/ventral pattern formation
GO:0016020 C membrane
GO:0016485 P protein processing
GO:0016887 F ATP hydrolysis activity
GO:0019886 P antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0021522 P spinal cord motor neuron differentiation
GO:0030030 P cell projection organization
GO:0030182 P neuron differentiation
GO:0030286 C dynein complex
GO:0030326 P embryonic limb morphogenesis
GO:0030900 P forebrain development
GO:0031512 C motile cilium
GO:0035721 P intraciliary retrograde transport
GO:0042384 P cilium assembly
GO:0042995 C cell projection
GO:0045177 C apical part of cell
GO:0045880 P positive regulation of smoothened signaling pathway
GO:0060271 P cilium assembly
GO:0060976 P coronary vasculature development
GO:0070062 C extracellular exosome
GO:0072372 C cilium
GO:0097542 C ciliary tip
FPKM:2.06 TPM:2.26
5515 A_BomoFB_comp114915_c0_seq1
285bp
FPKM:3.66 TPM:4.01
5516 A_BomoFB_comp114922_c0_seq1
920bp
FPKM:2.73 TPM:2.99
5517 A_BomoFB_comp114941_c0_seq1
557bp
FPKM:2.76 TPM:3.02
5518 A_BomoFB_comp114954_c0_seq1
330bp
 PREDICTED:_integrator_complex_subunit_5_[Bombyx_mori]
FPKM:5.51 TPM:6.04
5519 A_BomoFB_comp114958_c0_seq1
605bp
FPKM:3.86 TPM:4.23
5520 A_BomoFB_comp114960_c0_seq1
365bp
 sex_combs_on_midleg_[Bombyx_mori]
FPKM:3.87 TPM:4.24
previous next from show/35635

- SilkBase 1999-2023 -