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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5101 A_BomoFB_comp109072_c0_seq1
596bp
 dioxygenase_[Lactobacillus_composti]
FPKM:3.55 TPM:3.89
5102 A_BomoFB_comp109080_c0_seq1
947bp
FPKM:3.91 TPM:4.28
5103 A_BomoFB_comp109082_c0_seq1
332bp
FPKM:3.63 TPM:3.97
5104 A_BomoFB_comp109093_c0_seq1
586bp
FPKM:2.69 TPM:2.95
5105 A_BomoFB_comp109096_c0_seq1
724bp
 PREDICTED:_pre-mRNA-splicing_factor_SYF1_[Bombyx_mori]
GO:0000349 P generation of catalytic spliceosome for first transesterification step
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0001824 P blastocyst development
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0021987 P cerebral cortex development
GO:0071010 C prespliceosome
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071014 C post-mRNA release spliceosomal complex
FPKM:4.21 TPM:4.62
5106 A_BomoFB_comp1090_c0_seq1
370bp
 PREDICTED:_uncharacterized_protein_LOC106711526_[Papilio_machaon]
FPKM:0.87 TPM:0.95
5107 A_BomoFB_comp109108_c0_seq1
390bp
 hypothetical_protein_ACH49_30810,_partial_[Streptomyces_leeuwenhoekii]
FPKM:2.88 TPM:3.16
5108 A_BomoFB_comp109110_c0_seq1
783bp
 PREDICTED:_OTU_domain-containing_protein_7B-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0002376 P immune system process
GO:0002385 P mucosal immune response
GO:0003677 F DNA binding
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0006955 P immune response
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0032717 P negative regulation of interleukin-8 production
GO:0035871 P protein K11-linked deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0043124 P negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0046872 F metal ion binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0070536 P protein K63-linked deubiquitination
GO:0071108 P protein K48-linked deubiquitination
GO:0071947 P protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:1900181 P negative regulation of protein localization to nucleus
GO:1990380 F Lys48-specific deubiquitinase activity
FPKM:3.35 TPM:3.67
5109 A_BomoFB_comp109121_c0_seq1
581bp
 PREDICTED:_uncharacterized_protein_LOC105842300_[Bombyx_mori]
FPKM:3.68 TPM:4.04
5110 A_BomoFB_comp1091260_c0_seq1
223bp
FPKM:2.28 TPM:2.50
5111 A_BomoFB_comp109137_c0_seq1
232bp
FPKM:3.94 TPM:4.31
5112 A_BomoFB_comp109140_c0_seq1
477bp
 PREDICTED:_wiskott-Aldrich_syndrome_protein_family_member_2_[Bombyx_mori]
FPKM:3.51 TPM:3.84
5113 A_BomoFB_comp1091570_c0_seq1
202bp
FPKM:1.74 TPM:1.90
5114 A_BomoFB_comp109166_c0_seq1
752bp
 PREDICTED:_ras-related_and_estrogen-regulated_growth_inhibitor_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0008285 P negative regulation of cell population proliferation
GO:0009725 P response to hormone
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030308 P negative regulation of cell growth
FPKM:4.68 TPM:5.12
5115 A_BomoFB_comp109167_c0_seq1
677bp
 DNA_topoisomerase_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003918 F DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006259 P DNA metabolic process
GO:0006265 P DNA topological change
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
FPKM:4.07 TPM:4.46
5116 A_BomoFB_comp109188_c0_seq1
586bp
 PREDICTED:_uncharacterized_protein_LOC101747137_[Bombyx_mori]
FPKM:1.89 TPM:2.07
5117 A_BomoFB_comp109190_c0_seq1
395bp
 DNA_repair_protein_XRCC2_[Operophtera_brumata]
FPKM:3.33 TPM:3.64
5118 A_BomoFB_comp1091_c0_seq1
237bp
 PREDICTED:_uncharacterized_protein_LOC101744544_[Bombyx_mori]
FPKM:2.74 TPM:3.00
5119 A_BomoFB_comp109205_c0_seq1
413bp
 LSM_Sm-like_protein_family_member_[Bombyx_mori]
GO:0000398 P mRNA splicing, via spliceosome
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0030629 F U6 snRNA 3'-end binding
GO:0033962 P P-body assembly
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:1990726 C Lsm1-7-Pat1 complex
FPKM:5.43 TPM:5.95
5120 A_BomoFB_comp109211_c0_seq1
315bp
 Probably_inactive_leucine-rich_repeat_receptor-like_protein_kinase_[Glycine_soja]
FPKM:3.27 TPM:3.58
5121 A_BomoFB_comp109212_c0_seq1
843bp
 PREDICTED:_multiple_epidermal_growth_factor-like_domains_protein_8_[Bombyx_mori]
GO:0003143 P embryonic heart tube morphogenesis
GO:0005509 F calcium ion binding
GO:0005634 C nucleus
GO:0010468 P regulation of gene expression
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030326 P embryonic limb morphogenesis
GO:0030509 P BMP signaling pathway
GO:0048704 P embryonic skeletal system morphogenesis
GO:0048842 P positive regulation of axon extension involved in axon guidance
GO:0060971 P embryonic heart tube left/right pattern formation
GO:0060972 P left/right pattern formation
GO:0061371 P determination of heart left/right asymmetry
GO:0071907 P determination of digestive tract left/right asymmetry
GO:0097155 P fasciculation of sensory neuron axon
FPKM:3.45 TPM:3.79
5122 A_BomoFB_comp109214_c0_seq1
879bp
 PREDICTED:_testis-expressed_sequence_2_protein-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0006665 P sphingolipid metabolic process
GO:0007165 P signal transduction
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:3.43 TPM:3.76
5123 A_BomoFB_comp10922_c0_seq1
428bp
 PREDICTED:_uncharacterized_protein_LOC106124142_[Papilio_xuthus]
FPKM:433.50 TPM:474.99
5124 A_BomoFB_comp10923_c0_seq1
796bp
 PREDICTED:_spondin-1_[Amyelois_transitella]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0016020 C membrane
GO:0030414 F peptidase inhibitor activity
FPKM:324.86 TPM:355.96
5125 A_BomoFB_comp109247_c0_seq1
430bp
 Ubiquitin-protein_ligase_E3C_[Papilio_xuthus]
GO:0000209 P protein polyubiquitination
GO:0000502 C proteasome complex
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
FPKM:3.52 TPM:3.85
5126 A_BomoFB_comp109248_c0_seq1
268bp
 hypothetical_protein_JCM19231_149_[Vibrio_sp._JCM_19231]
FPKM:0.62 TPM:0.68
5127 A_BomoFB_comp109249_c0_seq1
1491bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_lethal(2)neighbour_of_tid_protein_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0007275 P multicellular organism development
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016758 F hexosyltransferase activity
GO:0030176 C integral component of endoplasmic reticulum membrane
FPKM:1.91 TPM:2.09
5128 A_BomoFB_comp109256_c0_seq1
493bp
 PREDICTED:_rho_GTPase-activating_protein_26_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005543 F phospholipid binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005925 C focal adhesion
GO:0007165 P signal transduction
GO:0030036 P actin cytoskeleton organization
GO:0030054 C cell junction
GO:0043547 P positive regulation of GTPase activity
GO:0051056 P regulation of small GTPase mediated signal transduction
FPKM:3.50 TPM:3.84
5129 A_BomoFB_comp1092580_c0_seq1
240bp
 spore_gernimation_protein_[Bacillus_glycinifermentans]
FPKM:1.75 TPM:1.91
5130 A_BomoFB_comp109259_c0_seq1
580bp
 PREDICTED:_uncharacterized_protein_LOC101738796_[Bombyx_mori]
FPKM:2.46 TPM:2.70
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