SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp109205_c0_seq1
Scaffold_idBomo_Chr3
NCBI non-redundant
(nr)		LSM_Sm-like_protein_family_member_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0030629 F U6 snRNA 3'-end binding
GO:0033962 P P-body assembly
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:1990726 C Lsm1-7-Pat1 complex
Transcript
Level		FPKM:5.43 TPM:5.95
ORF EntryO_BomoFB19835_3prime_partial:A_BomoFB_comp109205_c0_seq1
Sequence
(Nucleotide)
CGAAAACCAAAAGATAACCTAATACATTCAACCGACATCATTGAAAATACAATTTAAAAA
TAGCGACTACTTTAACAAGACATAAAACAAGCTATTTTCATAACAATATCTAGAAATGGC
AGACGATACTGAAAATGTAGCTGTTATGACCGTAAAAGAACCTTTGGATTTGATAAGGCT
TAGCTTAGATGAGAGAATTTATGTTAAAATGCGTAATGAACGAGAGCTCAGAGGCAAACT
GCATGCCTATGATCAACATCTGAATATGGTATTAGGAGATGCCGAAGAAACTATAACAAC
CGTTGAAATCGACGAAGAAACATACGAAGAAGTGTACAGAACTACAAAACGAACTATTCC
TATGTTATTTGTAAGAGGAGATGGTGTCATACTTGTTTCACCACCAGTACGTG
(413 bp)

- SilkBase 1999-2023 -