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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5071 A_BomoFB_comp108933_c0_seq1
881bp
FPKM:2.96 TPM:3.24
5072 A_BomoFB_comp108937_c0_seq1
219bp
 PREDICTED:_molybdenum_cofactor_biosynthesis_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005525 F GTP binding
GO:0006777 P Mo-molybdopterin cofactor biosynthetic process
GO:0016829 F lyase activity
GO:0019008 C molybdopterin synthase complex
GO:0032324 P molybdopterin cofactor biosynthetic process
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0061597 F obsolete cyclic pyranopterin monophosphate synthase activity
FPKM:12.26 TPM:13.43
5073 A_BomoFB_comp108946_c0_seq1
601bp
FPKM:3.77 TPM:4.13
5074 A_BomoFB_comp108949_c0_seq1
1060bp
 PREDICTED:_uncharacterized_protein_LOC101740446_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003746 F translation elongation factor activity
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0006414 P translational elongation
GO:0008150 P biological_process
GO:0043231 C intracellular membrane-bounded organelle
FPKM:3.40 TPM:3.73
5075 A_BomoFB_comp108954_c0_seq1
1179bp
 PREDICTED:_probable_leucine--tRNA_ligase,_mitochondrial_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0002161 F aminoacyl-tRNA editing activity
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004823 F leucine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006429 P leucyl-tRNA aminoacylation
GO:0006450 P regulation of translational fidelity
GO:0016874 F ligase activity
FPKM:1.96 TPM:2.15
5076 A_BomoFB_comp108956_c0_seq1
223bp
FPKM:4.56 TPM:5.00
5077 A_BomoFB_comp108958_c0_seq1
345bp
 hypothetical_protein_SBOR_3451_[Sclerotinia_borealis_F-4157]
FPKM:5.01 TPM:5.49
5078 A_BomoFB_comp10895_c0_seq1
2044bp
 PREDICTED:_spondin-1-like_[Plutella_xylostella]
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0007155 P cell adhesion
GO:0046872 F metal ion binding
FPKM:371.41 TPM:406.96
5079 A_BomoFB_comp108964_c0_seq1
532bp
FPKM:3.27 TPM:3.58
5080 A_BomoFB_comp108966_c0_seq1
855bp
 PREDICTED:_vacuolar_protein_sorting-associated_protein_8_homolog_[Bombyx_mori]
FPKM:4.36 TPM:4.78
5081 A_BomoFB_comp108969_c0_seq1
743bp
 PREDICTED:_vacuolar_protein_sorting-associated_protein_13D,_partial_[Amyelois_transitella]
FPKM:2.52 TPM:2.76
5082 A_BomoFB_comp108987_c0_seq1
570bp
 PREDICTED:_neurofilament_heavy_polypeptide-like_isoform_X4_[Bombyx_mori]
FPKM:3.09 TPM:3.38
5083 A_BomoFB_comp108993_c0_seq1
320bp
 hypothetical_protein_[Leptospira_yanagawae]
FPKM:1.18 TPM:1.29
5084 A_BomoFB_comp1089_c0_seq1
590bp
 hypothetical_protein_RR46_14827_[Papilio_xuthus]
FPKM:1.33 TPM:1.46
5085 A_BomoFB_comp108_c0_seq1
244bp
FPKM:1.65 TPM:1.81
5086 A_BomoFB_comp108_c1_seq1
235bp
FPKM:1.88 TPM:2.06
5087 A_BomoFB_comp109001_c0_seq1
1289bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_integrator_complex_subunit_8_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0016180 P snRNA processing
GO:0032039 C integrator complex
GO:0042795 P snRNA transcription by RNA polymerase II
FPKM:3.68 TPM:4.03
5088 A_BomoFB_comp109020_c0_seq1
704bp
FPKM:2.19 TPM:2.40
5089 A_BomoFB_comp109023_c0_seq1
1213bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_probable_peroxisomal_acyl-coenzyme_A_oxidase_1_[Papilio_machaon]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0003997 F acyl-CoA oxidase activity
GO:0005777 C peroxisome
GO:0006091 P generation of precursor metabolites and energy
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0006693 P prostaglandin metabolic process
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0019395 P fatty acid oxidation
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0033540 P fatty acid beta-oxidation using acyl-CoA oxidase
GO:0050660 F flavin adenine dinucleotide binding
GO:0052890 F oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
FPKM:4.53 TPM:4.97
5090 A_BomoFB_comp109025_c0_seq1
461bp
 hypothetical_protein_B456_002G085800_[Gossypium_raimondii]
FPKM:3.51 TPM:3.85
5091 A_BomoFB_comp10902_c0_seq1
1638bp
 PREDICTED:_putative_inorganic_phosphate_cotransporter_[Amyelois_transitella]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0015114 F phosphate ion transmembrane transporter activity
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035435 P phosphate ion transmembrane transport
GO:0055085 P transmembrane transport
FPKM:370.50 TPM:405.96
5092 A_BomoFB_comp109041_c0_seq1
902bp
FPKM:2.19 TPM:2.40
5093 A_BomoFB_comp109044_c0_seq1
1005bp
 PREDICTED:_thioredoxin-related_transmembrane_protein_2_homolog_[Papilio_xuthus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005623 C obsolete cell
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0045454 P cell redox homeostasis
FPKM:2.84 TPM:3.11
5094 A_BomoFB_comp109048_c0_seq1
691bp
FPKM:2.99 TPM:3.28
5095 A_BomoFB_comp109049_c0_seq1
870bp
 PREDICTED:_calcium/calmodulin-dependent_protein_kinase_kinase_2_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004683 F calmodulin-dependent protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0005509 F calcium ion binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0019722 P calcium-mediated signaling
GO:0042995 C cell projection
GO:0045859 P regulation of protein kinase activity
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046777 P protein autophosphorylation
FPKM:2.77 TPM:3.03
5096 A_BomoFB_comp109053_c0_seq1
746bp
FPKM:3.95 TPM:4.33
5097 A_BomoFB_comp109056_c0_seq1
2105bp
 PREDICTED:_cleavage_and_polyadenylation_specificity_factor_subunit_1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0017022 F myosin binding
GO:0022008 P neurogenesis
FPKM:2.77 TPM:3.03
5098 A_BomoFB_comp109058_c0_seq1
958bp
 PREDICTED:_activin_receptor_type-1_[Amyelois_transitella]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0001569 P branching involved in blood vessel morphogenesis
GO:0001702 P gastrulation with mouth forming second
GO:0001707 P mesoderm formation
GO:0001755 P neural crest cell migration
GO:0002526 P acute inflammatory response
GO:0003143 P embryonic heart tube morphogenesis
GO:0003183 P mitral valve morphogenesis
GO:0003289 P atrial septum primum morphogenesis
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004675 F transmembrane receptor protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005025 F transforming growth factor beta receptor activity, type I
GO:0005057 F obsolete signal transducer activity, downstream of receptor
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005887 C integral component of plasma membrane
GO:0006468 P protein phosphorylation
GO:0007178 P transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007281 P germ cell development
GO:0007368 P determination of left/right symmetry
GO:0007369 P gastrulation
GO:0007498 P mesoderm development
GO:0007507 P heart development
GO:0009968 P negative regulation of signal transduction
GO:0010694 P positive regulation of alkaline phosphatase activity
GO:0010718 P positive regulation of epithelial to mesenchymal transition
GO:0010862 P positive regulation of pathway-restricted SMAD protein phosphorylation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016361 F activin receptor activity, type I
GO:0016477 P cell migration
GO:0016740 F transferase activity
GO:0018107 P peptidyl-threonine phosphorylation
GO:0019838 F growth factor binding
GO:0023014 P signal transduction
GO:0030278 P regulation of ossification
GO:0030335 P positive regulation of cell migration
GO:0030501 P positive regulation of bone mineralization
GO:0030509 P BMP signaling pathway
GO:0030513 P positive regulation of BMP signaling pathway
GO:0032924 P activin receptor signaling pathway
GO:0032926 P negative regulation of activin receptor signaling pathway
GO:0035556 P intracellular signal transduction
GO:0042118 P endothelial cell activation
GO:0042803 F protein homodimerization activity
GO:0045177 C apical part of cell
GO:0045669 P positive regulation of osteoblast differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
GO:0048179 C activin receptor complex
GO:0048185 F activin binding
GO:0048762 P mesenchymal cell differentiation
GO:0050431 F transforming growth factor beta binding
GO:0051145 P smooth muscle cell differentiation
GO:0060037 P pharyngeal system development
GO:0060317 P cardiac epithelial to mesenchymal transition
GO:0060389 P pathway-restricted SMAD protein phosphorylation
GO:0060923 P cardiac muscle cell fate commitment
GO:0061445 P endocardial cushion cell fate commitment
GO:0071773 P cellular response to BMP stimulus
GO:2000017 P positive regulation of determination of dorsal identity
GO:2001237 P negative regulation of extrinsic apoptotic signaling pathway
FPKM:4.06 TPM:4.45
5099 A_BomoFB_comp109063_c0_seq1
399bp
 PREDICTED:_uncharacterized_protein_LOC106129060_[Amyelois_transitella]
FPKM:4.27 TPM:4.68
5100 A_BomoFB_comp109066_c0_seq1
1443bp
 putative_light_protein,_partial_[Operophtera_brumata]
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005794 C Golgi apparatus
GO:0005798 C Golgi-associated vesicle
GO:0005829 C cytosol
GO:0006623 P protein targeting to vacuole
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006914 P autophagy
GO:0008017 F microtubule binding
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0008333 P endosome to lysosome transport
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030123 C AP-3 adaptor complex
GO:0030136 C clathrin-coated vesicle
GO:0030897 C HOPS complex
GO:0031410 C cytoplasmic vesicle
GO:0031902 C late endosome membrane
GO:0033263 C CORVET complex
GO:0034058 P endosomal vesicle fusion
GO:0035542 P regulation of SNARE complex assembly
GO:0042144 P vacuole fusion, non-autophagic
GO:0042802 F identical protein binding
GO:0043621 F protein self-association
GO:0045055 P regulated exocytosis
GO:0046872 F metal ion binding
GO:0048193 P Golgi vesicle transport
GO:0051020 F GTPase binding
GO:0071439 C clathrin complex
GO:1902774 P late endosome to lysosome transport
FPKM:3.06 TPM:3.35
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