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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5131 A_BomoFB_comp109262_c0_seq1
962bp
FPKM:2.44 TPM:2.67
5132 A_BomoFB_comp109266_c0_seq1
768bp
 hypothetical_protein_[Bombyx_mori]
FPKM:2.88 TPM:3.15
5133 A_BomoFB_comp109272_c0_seq1
310bp
FPKM:1.70 TPM:1.86
5134 A_BomoFB_comp109286_c0_seq1
231bp
FPKM:5.00 TPM:5.48
5135 A_BomoFB_comp10928_c0_seq1
1085bp
 ferritin_precursor_[Bombyx_mori]
GO:0004322 F ferroxidase activity
GO:0005576 C extracellular region
GO:0005623 C obsolete cell
GO:0006826 P iron ion transport
GO:0006879 P cellular iron ion homeostasis
GO:0008199 F ferric iron binding
GO:0016491 F oxidoreductase activity
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:331.35 TPM:363.07
5136 A_BomoFB_comp109295_c0_seq1
624bp
 PREDICTED:_adenosine_3'-phospho_5'-phosphosulfate_transporter_1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0007310 P oocyte dorsal/ventral axis specification
GO:0015012 P heparan sulfate proteoglycan biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030173 C integral component of Golgi membrane
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0046963 P 3'-phosphoadenosine 5'-phosphosulfate transport
GO:0046964 F 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:1902559 P 3'-phospho-5'-adenylyl sulfate transmembrane transport
FPKM:3.45 TPM:3.78
5137 A_BomoFB_comp1092_c0_seq1
1630bp
 PREDICTED:_adenylate_cyclase_type_2-like_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002165 P instar larval or pupal development
GO:0004016 F adenylate cyclase activity
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006171 P cAMP biosynthetic process
GO:0007189 P adenylate cyclase-activating G protein-coupled receptor signaling pathway
GO:0007193 P adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway
GO:0009190 P cyclic nucleotide biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016829 F lyase activity
GO:0016849 F phosphorus-oxygen lyase activity
GO:0019933 P cAMP-mediated signaling
GO:0035556 P intracellular signal transduction
GO:0040015 P negative regulation of multicellular organism growth
GO:0042594 P response to starvation
GO:0046872 F metal ion binding
FPKM:1.39 TPM:1.52
5138 A_BomoFB_comp109309_c0_seq1
3646bp
 PREDICTED:_multiple_epidermal_growth_factor-like_domains_protein_8_[Bombyx_mori]
GO:0003143 P embryonic heart tube morphogenesis
GO:0003674 F molecular_function
GO:0005509 F calcium ion binding
GO:0005634 C nucleus
GO:0007368 P determination of left/right symmetry
GO:0010468 P regulation of gene expression
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030326 P embryonic limb morphogenesis
GO:0030509 P BMP signaling pathway
GO:0035108 P limb morphogenesis
GO:0042074 P cell migration involved in gastrulation
GO:0048704 P embryonic skeletal system morphogenesis
GO:0048842 P positive regulation of axon extension involved in axon guidance
GO:0055113 P epiboly involved in gastrulation with mouth forming second
GO:0060971 P embryonic heart tube left/right pattern formation
GO:0060972 P left/right pattern formation
GO:0060976 P coronary vasculature development
GO:0061371 P determination of heart left/right asymmetry
GO:0070062 C extracellular exosome
GO:0071907 P determination of digestive tract left/right asymmetry
GO:0097094 P craniofacial suture morphogenesis
GO:0097155 P fasciculation of sensory neuron axon
FPKM:2.90 TPM:3.18
5139 A_BomoFB_comp1093336_c0_seq1
227bp
FPKM:2.13 TPM:2.34
5140 A_BomoFB_comp109336_c0_seq1
210bp
FPKM:4.38 TPM:4.80
5141 A_BomoFB_comp109339_c0_seq1
454bp
FPKM:0.40 TPM:0.44
5142 A_BomoFB_comp109353_c0_seq1
593bp
FPKM:3.97 TPM:4.35
5143 A_BomoFB_comp109367_c0_seq1
1249bp
 hypothetical_protein_KGM_14584_[Danaus_plexippus]
FPKM:2.39 TPM:2.62
5144 A_BomoFB_comp109372_c0_seq1
250bp
FPKM:4.58 TPM:5.02
5145 A_BomoFB_comp109374_c0_seq1
1378bp
 PREDICTED:_uncharacterized_protein_LOC101746875_[Bombyx_mori]
FPKM:2.32 TPM:2.54
5146 A_BomoFB_comp109376_c0_seq1
403bp
 PREDICTED:_ATP-dependent_RNA_helicase_DDX24_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
FPKM:3.45 TPM:3.78
5147 A_BomoFB_comp109379_c0_seq1
460bp
FPKM:3.53 TPM:3.86
5148 A_BomoFB_comp109397_c0_seq1
1315bp
 PREDICTED:_CCR4-NOT_transcription_complex_subunit_3_isoform_X1_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0001829 P trophectodermal cell differentiation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007275 P multicellular organism development
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0031047 P gene silencing by RNA
GO:2000036 P regulation of stem cell population maintenance
FPKM:2.83 TPM:3.10
5149 A_BomoFB_comp1093_c0_seq1
344bp
 PREDICTED:_importin-11_[Bombyx_mori]
FPKM:2.35 TPM:2.58
5150 A_BomoFB_comp1094132_c0_seq1
205bp
unnamed_protein_product_[Homo_sapiens]
FPKM:1.62 TPM:1.78
5151 A_BomoFB_comp109434_c0_seq1
400bp
FPKM:3.75 TPM:4.11
5152 A_BomoFB_comp109449_c0_seq1
393bp
 PREDICTED:_serrate_RNA_effector_molecule_homolog_isoform_X2_[Bombyx_mori]
FPKM:4.39 TPM:4.81
5153 A_BomoFB_comp109459_c0_seq1
2018bp
FPKM:2.34 TPM:2.56
5154 A_BomoFB_comp109461_c0_seq1
1049bp
 PREDICTED:_transcription_factor_Sp3-like_isoform_X3_[Bombyx_mori]
FPKM:3.07 TPM:3.37
5155 A_BomoFB_comp109464_c0_seq1
2205bp
 PREDICTED:_phosphatidylinositol_4-kinase_alpha_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004430 F 1-phosphatidylinositol 4-kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030660 C Golgi-associated vesicle membrane
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0048015 P phosphatidylinositol-mediated signaling
FPKM:3.03 TPM:3.32
5156 A_BomoFB_comp109465_c0_seq1
295bp
FPKM:5.74 TPM:6.29
5157 A_BomoFB_comp109467_c0_seq1
418bp
 putative_UPF2_regulator_of_nonsense_transcripts-like_protein_[Operophtera_brumata]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001889 P liver development
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006406 P mRNA export from nucleus
GO:0031100 P animal organ regeneration
GO:0035145 C exon-exon junction complex
GO:0042162 F telomeric DNA binding
GO:0048471 C perinuclear region of cytoplasm
FPKM:4.16 TPM:4.55
5158 A_BomoFB_comp1094757_c0_seq1
207bp
 PREDICTED:_serine/threonine-protein_kinase_D1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001525 P angiogenesis
GO:0001938 P positive regulation of endothelial cell proliferation
GO:0002376 P immune system process
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004697 F protein kinase C activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005911 C cell-cell junction
GO:0005938 C cell cortex
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0006954 P inflammatory response
GO:0007030 P Golgi organization
GO:0007165 P signal transduction
GO:0007229 P integrin-mediated signaling pathway
GO:0007265 P Ras protein signal transduction
GO:0007399 P nervous system development
GO:0008283 P cell population proliferation
GO:0010595 P positive regulation of endothelial cell migration
GO:0010837 P regulation of keratinocyte proliferation
GO:0010976 P positive regulation of neuron projection development
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0030148 P sphingolipid biosynthetic process
GO:0030154 P cell differentiation
GO:0031647 P regulation of protein stability
GO:0032793 P positive regulation of CREB transcription factor activity
GO:0033138 P positive regulation of peptidyl-serine phosphorylation
GO:0034599 P cellular response to oxidative stress
GO:0035556 P intracellular signal transduction
GO:0035924 P cellular response to vascular endothelial growth factor stimulus
GO:0038033 P positive regulation of endothelial cell chemotaxis by VEGF-activated vascular endothelial growth factor receptor signaling pathway
GO:0042802 F identical protein binding
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043536 P positive regulation of blood vessel endothelial cell migration
GO:0045087 P innate immune response
GO:0045669 P positive regulation of osteoblast differentiation
GO:0045766 P positive regulation of angiogenesis
GO:0045806 P negative regulation of endocytosis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0048010 P vascular endothelial growth factor receptor signaling pathway
GO:0048193 P Golgi vesicle transport
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
GO:0051279 P regulation of release of sequestered calcium ion into cytosol
GO:0060548 P negative regulation of cell death
GO:0089700 P protein kinase D signaling
GO:1901727 P positive regulation of histone deacetylase activity
GO:2001028 P positive regulation of endothelial cell chemotaxis
GO:2001044 P regulation of integrin-mediated signaling pathway
FPKM:3.11 TPM:3.41
5159 A_BomoFB_comp1094762_c0_seq1
229bp
FPKM:1.03 TPM:1.13
5160 A_BomoFB_comp109479_c0_seq1
690bp
 phosphatidate_cytidylyltransferase_[Danaus_plexippus]
GO:0004605 F phosphatidate cytidylyltransferase activity
GO:0005635 C nuclear envelope
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005790 C smooth endoplasmic reticulum
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006629 P lipid metabolic process
GO:0006655 P phosphatidylglycerol biosynthetic process
GO:0007430 P terminal branching, open tracheal system
GO:0007601 P visual perception
GO:0007602 P phototransduction
GO:0008654 P phospholipid biosynthetic process
GO:0010883 P regulation of lipid storage
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016024 P CDP-diacylglycerol biosynthetic process
GO:0016049 P cell growth
GO:0016056 P rhodopsin mediated signaling pathway
GO:0016740 F transferase activity
GO:0016772 F transferase activity, transferring phosphorus-containing groups
GO:0016779 F nucleotidyltransferase activity
GO:0019915 P lipid storage
GO:0043052 P thermotaxis
GO:0050896 P response to stimulus
GO:0060439 P trachea morphogenesis
FPKM:2.89 TPM:3.17
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