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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5041 A_BomoFB_comp10859_c0_seq1
3446bp
 paramyosin_[Bombyx_mandarina]
GO:0003774 F cytoskeletal motor activity
GO:0005737 C cytoplasm
GO:0005863 C striated muscle myosin thick filament
GO:0007498 P mesoderm development
GO:0008152 P metabolic process
GO:0008307 F structural constituent of muscle
GO:0016459 C myosin complex
GO:0030016 C myofibril
GO:0030239 P myofibril assembly
GO:0032982 C myosin filament
FPKM:406.88 TPM:445.83
5042 A_BomoFB_comp1086587_c0_seq1
275bp
FPKM:1.15 TPM:1.26
5043 A_BomoFB_comp10870_c0_seq1
1123bp
 PREDICTED:_C-type_lectin_11_isoform_X1_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0030246 F carbohydrate binding
FPKM:467.52 TPM:512.27
5044 A_BomoFB_comp108717_c0_seq1
345bp
 PREDICTED:_uncharacterized_protein_LOC101740483_[Bombyx_mori]
FPKM:6.01 TPM:6.59
5045 A_BomoFB_comp108732_c0_seq1
546bp
FPKM:2.69 TPM:2.95
5046 A_BomoFB_comp10873_c0_seq1
2277bp
 hypothetical_protein_KGM_19146_[Danaus_plexippus]
GO:0004491 F methylmalonate-semialdehyde dehydrogenase (acylating) activity
GO:0005739 C mitochondrion
GO:0006573 P valine metabolic process
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0016620 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0018478 F malonate-semialdehyde dehydrogenase (acetylating) activity
GO:0019859 P thymine metabolic process
GO:0055114 P obsolete oxidation-reduction process
FPKM:390.49 TPM:427.87
5047 A_BomoFB_comp1087476_c0_seq1
242bp
 olfactory_receptor_[Bombyx_mori]
FPKM:0.85 TPM:0.93
5048 A_BomoFB_comp108787_c0_seq1
507bp
FPKM:3.85 TPM:4.22
5049 A_BomoFB_comp108793_c0_seq1
365bp
 transposase_[Salmonella_enterica_subsp._enterica_serovar_Rubislaw_str._SA20030553]
FPKM:1.49 TPM:1.63
5050 A_BomoFB_comp108795_c0_seq1
812bp
 Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:3.28 TPM:3.59
5051 A_BomoFB_comp108797_c0_seq1
440bp
FPKM:3.38 TPM:3.70
5052 A_BomoFB_comp1087_c0_seq1
225bp
FPKM:2.21 TPM:2.42
5053 A_BomoFB_comp108834_c0_seq1
1776bp
 PREDICTED:_zinc_finger_CCCH-type_with_G_patch_domain-containing_protein_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:3.15 TPM:3.45
5054 A_BomoFB_comp108839_c0_seq1
422bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_vacuolar_protein_sorting-associated_protein_11_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005776 C autophagosome
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006904 P vesicle docking involved in exocytosis
GO:0006914 P autophagy
GO:0007032 P endosome organization
GO:0007040 P lysosome organization
GO:0008270 F zinc ion binding
GO:0008333 P endosome to lysosome transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0016192 P vesicle-mediated transport
GO:0019904 F protein domain specific binding
GO:0019905 F syntaxin binding
GO:0030136 C clathrin-coated vesicle
GO:0030139 C endocytic vesicle
GO:0030674 F protein-macromolecule adaptor activity
GO:0030897 C HOPS complex
GO:0031410 C cytoplasmic vesicle
GO:0031647 P regulation of protein stability
GO:0031902 C late endosome membrane
GO:0034058 P endosomal vesicle fusion
GO:0035542 P regulation of SNARE complex assembly
GO:0046872 F metal ion binding
GO:1902115 P regulation of organelle assembly
GO:1903364 P positive regulation of cellular protein catabolic process
GO:1903955 P positive regulation of protein targeting to mitochondrion
GO:2000643 P positive regulation of early endosome to late endosome transport
FPKM:4.09 TPM:4.48
5055 A_BomoFB_comp108848_c0_seq1
1019bp
 PREDICTED:_serine/threonine-protein_kinase_10_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0023014 P signal transduction
GO:0030334 P regulation of cell migration
GO:0031122 P cytoplasmic microtubule organization
GO:0031252 C cell leading edge
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0042981 P regulation of apoptotic process
GO:0046777 P protein autophosphorylation
GO:0051893 P regulation of focal adhesion assembly
GO:0070062 C extracellular exosome
FPKM:3.05 TPM:3.34
5056 A_BomoFB_comp108849_c0_seq1
297bp
FPKM:4.70 TPM:5.15
5057 A_BomoFB_comp108855_c0_seq1
842bp
 PREDICTED:_neuroblastoma-amplified_sequence-like_[Bombyx_mori]
GO:0000149 F SNARE binding
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0070939 C Dsl1/NZR complex
GO:2000623 P negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
FPKM:4.28 TPM:4.69
5058 A_BomoFB_comp108858_c0_seq1
1427bp
 PREDICTED:_E3_ubiquitin-protein_ligase_TRIM33_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
FPKM:2.01 TPM:2.20
5059 A_BomoFB_comp108862_c0_seq1
1116bp
FPKM:2.33 TPM:2.55
5060 A_BomoFB_comp108880_c0_seq1
1357bp
 PREDICTED:_afadin_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005912 C adherens junction
GO:0007155 P cell adhesion
GO:0007165 P signal transduction
GO:0007267 P cell-cell signaling
GO:0008022 F protein C-terminus binding
GO:0017016 F small GTPase binding
GO:0030054 C cell junction
GO:0034332 P adherens junction organization
GO:0043547 P positive regulation of GTPase activity
GO:0090557 P establishment of endothelial intestinal barrier
FPKM:2.73 TPM:2.99
5061 A_BomoFB_comp108883_c0_seq1
424bp
 PREDICTED:_uncharacterized_protein_LOC101744804_isoform_X1_[Bombyx_mori]
FPKM:5.63 TPM:6.17
5062 A_BomoFB_comp108892_c0_seq1
1498bp
 PREDICTED:_nuclear_pore_complex_protein_Nup98-Nup96_isoform_X3_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006810 P transport
GO:0008139 F nuclear localization sequence binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017056 F structural constituent of nuclear pore
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
FPKM:3.63 TPM:3.98
5063 A_BomoFB_comp1088_c0_seq1
526bp
 PREDICTED:_PHD_finger_protein_rhinoceros-like_isoform_X2_[Bombyx_mori]
FPKM:0.95 TPM:1.04
5064 A_BomoFB_comp108904_c0_seq1
533bp
FPKM:1.55 TPM:1.70
5065 A_BomoFB_comp108909_c0_seq1
1377bp
 PREDICTED:_elongation_factor_Tu_GTP-binding_domain-containing_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0006412 P translation
GO:0008152 P metabolic process
GO:0042254 P ribosome biogenesis
GO:0042256 P mature ribosome assembly
GO:0043022 F ribosome binding
FPKM:3.05 TPM:3.34
5066 A_BomoFB_comp108915_c0_seq1
290bp
 actin_5C_[Latrodectus_hesperus]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
FPKM:6.99 TPM:7.66
5067 A_BomoFB_comp108917_c0_seq1
323bp
FPKM:2.31 TPM:2.53
5068 A_BomoFB_comp10891_c0_seq1
1418bp
 PREDICTED:_inositol_oxygenase-like_[Bombyx_mori]
GO:0005506 F iron ion binding
GO:0005737 C cytoplasm
GO:0008199 F ferric iron binding
GO:0016491 F oxidoreductase activity
GO:0019310 P inositol catabolic process
GO:0046872 F metal ion binding
GO:0050113 F inositol oxygenase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:307.64 TPM:337.08
5069 A_BomoFB_comp108926_c0_seq1
229bp
FPKM:7.23 TPM:7.92
5070 A_BomoFB_comp108930_c0_seq1
331bp
 PREDICTED:_uncharacterized_protein_LOC101735441_[Bombyx_mori]
FPKM:1.46 TPM:1.60
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