SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/35635
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5011 A_BomoFB_comp108101_c0_seq1
481bp
FPKM:1.82 TPM:2.00
5012 A_BomoFB_comp1081091_c0_seq1
220bp
FPKM:1.20 TPM:1.32
5013 A_BomoFB_comp10810_c0_seq1
1019bp
 PREDICTED:_uncharacterized_protein_LOC106125684_[Papilio_xuthus]
FPKM:314.46 TPM:344.56
5014 A_BomoFB_comp108129_c0_seq1
2101bp
 PREDICTED:_flocculation_protein_FLO11-like_[Bombyx_mori]
FPKM:3.20 TPM:3.50
5015 A_BomoFB_comp10812_c0_seq1
742bp
 hypothetical_protein_KGM_16296_[Danaus_plexippus]
GO:0006729 P tetrahydrobiopterin biosynthetic process
GO:0008124 F 4-alpha-hydroxytetrahydrobiopterin dehydratase activity
GO:0016829 F lyase activity
FPKM:263.30 TPM:288.51
5016 A_BomoFB_comp10818_c0_seq1
1815bp
 Lambda-crystallin-like_[Papilio_xuthus]
GO:0003857 F 3-hydroxyacyl-CoA dehydrogenase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006631 P fatty acid metabolic process
GO:0016491 F oxidoreductase activity
GO:0042803 F protein homodimerization activity
GO:0050104 F L-gulonate 3-dehydrogenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:0070403 F NAD+ binding
FPKM:327.31 TPM:358.64
5017 A_BomoFB_comp10819_c0_seq1
1043bp
 40S_ribosomal_protein_SA_[Bombyx_mori]
GO:0000028 P ribosomal small subunit assembly
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015935 C small ribosomal subunit
GO:0022627 C cytosolic small ribosomal subunit
GO:0030529 C ribonucleoprotein complex
FPKM:578.58 TPM:633.97
5018 A_BomoFB_comp108204_c0_seq1
490bp
FPKM:3.01 TPM:3.29
5019 A_BomoFB_comp108211_c0_seq1
1849bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_DDB1-_and_CUL4-associated_factor_10-like_[Plutella_xylostella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:3.36 TPM:3.68
5020 A_BomoFB_comp10822_c0_seq1
790bp
 kazal-type_proteinase_inhibitor_precursor_[Bombyx_mori]
FPKM:335.76 TPM:367.90
5021 A_BomoFB_comp10823_c0_seq1
1687bp
 acyl-coenzyme_A_dehydrogenase_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0009083 P branched-chain amino acid catabolic process
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0050660 F flavin adenine dinucleotide binding
GO:0052890 F oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
FPKM:412.61 TPM:452.10
5022 A_BomoFB_comp1082672_c0_seq1
224bp
FPKM:1.12 TPM:1.23
5023 A_BomoFB_comp1082751_c0_seq1
210bp
 telomerase_reverse_transcriptase_[Bombyx_mori]
FPKM:2.92 TPM:3.20
5024 A_BomoFB_comp10828_c0_seq1
1049bp
 translation_initiation_factor_5A_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003746 F translation elongation factor activity
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006414 P translational elongation
GO:0006452 P translational frameshifting
GO:0043022 F ribosome binding
GO:0045901 P positive regulation of translational elongation
GO:0045905 P positive regulation of translational termination
FPKM:388.65 TPM:425.85
5025 A_BomoFB_comp10829_c0_seq1
1427bp
 PREDICTED:_argininosuccinate_synthase_[Papilio_machaon]
GO:0000050 P urea cycle
GO:0000053 P argininosuccinate metabolic process
GO:0000166 F nucleotide binding
GO:0004055 F argininosuccinate synthase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006526 P arginine biosynthetic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0016874 F ligase activity
FPKM:525.25 TPM:575.53
5026 A_BomoFB_comp108308_c0_seq1
853bp
 Uncharacterized_protein_OBRU01_10972_[Operophtera_brumata]
GO:0008276 F protein methyltransferase activity
GO:0018364 P peptidyl-glutamine methylation
GO:0030488 P tRNA methylation
GO:0043234 C protein-containing complex
GO:0070062 C extracellular exosome
GO:0070476 P rRNA (guanine-N7)-methylation
FPKM:3.16 TPM:3.46
5027 A_BomoFB_comp10834_c0_seq1
899bp
 troponin_C_25D_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0046872 F metal ion binding
FPKM:343.95 TPM:376.87
5028 A_BomoFB_comp108379_c0_seq1
1215bp
 PREDICTED:_histone-lysine_N-methyltransferase,_H3_lysine-79_specific_isoform_X4_[Bombyx_mori]
GO:0000781 C chromosome, telomeric region
GO:0005634 C nucleus
GO:0006342 P heterochromatin assembly
GO:0006348 P subtelomeric heterochromatin assembly
GO:0008168 F methyltransferase activity
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0016740 F transferase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0030702 P pericentric heterochromatin assembly
GO:0031151 F histone methyltransferase activity (H3-K79 specific)
GO:0032259 P methylation
GO:0034729 P histone H3-K79 methylation
GO:0035097 C histone methyltransferase complex
GO:0046331 P lateral inhibition
GO:0048096 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0051726 P regulation of cell cycle
GO:2000637 P positive regulation of gene silencing by miRNA
FPKM:2.89 TPM:3.17
5029 A_BomoFB_comp10838_c0_seq1
4341bp
 fatty_acid_synthase_2,_partial_[Helicoverpa_assulta]
GO:0001649 P osteoblast differentiation
GO:0003824 F catalytic activity
GO:0004312 F fatty acid synthase activity
GO:0004313 F [acyl-carrier-protein] S-acetyltransferase activity
GO:0004314 F [acyl-carrier-protein] S-malonyltransferase activity
GO:0004315 F 3-oxoacyl-[acyl-carrier-protein] synthase activity
GO:0004316 F 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
GO:0004317 F 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity
GO:0004319 F enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity
GO:0004320 F oleoyl-[acyl-carrier-protein] hydrolase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006084 P acetyl-CoA metabolic process
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0008144 F obsolete drug binding
GO:0008152 P metabolic process
GO:0009058 P biosynthetic process
GO:0016020 C membrane
GO:0016295 F myristoyl-[acyl-carrier-protein] hydrolase activity
GO:0016296 F palmitoyl-[acyl-carrier-protein] hydrolase activity
GO:0016297 F acyl-[acyl-carrier-protein] hydrolase activity
GO:0016491 F oxidoreductase activity
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0016829 F lyase activity
GO:0019171 F 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity
GO:0030879 P mammary gland development
GO:0031177 F phosphopantetheine binding
GO:0042470 C melanosome
GO:0042587 C glycogen granule
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0047117 F enoyl-[acyl-carrier-protein] reductase (NADPH, A-specific) activity
GO:0047451 F 3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:0070402 F NADPH binding
GO:0071353 P cellular response to interleukin-4
FPKM:241.25 TPM:264.35
5030 A_BomoFB_comp10841_c0_seq1
2009bp
 ATP_synthase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000275 C mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1)
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005811 C lipid droplet
GO:0005875 C microtubule associated complex
GO:0006754 P ATP biosynthetic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006909 P phagocytosis
GO:0007286 P spermatid development
GO:0015986 P ATP synthesis coupled proton transport
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016820 F ATPase-coupled transmembrane transporter activity
GO:0019233 P sensory perception of pain
GO:0019915 P lipid storage
GO:0022900 P electron transport chain
GO:0033178 C proton-transporting two-sector ATPase complex, catalytic domain
GO:0040007 P growth
GO:0045261 C proton-transporting ATP synthase complex, catalytic core F(1)
GO:0046034 P ATP metabolic process
GO:0046933 F proton-transporting ATP synthase activity, rotational mechanism
GO:0046961 F proton-transporting ATPase activity, rotational mechanism
GO:1902769 P regulation of choline O-acetyltransferase activity
FPKM:461.35 TPM:505.51
5031 A_BomoFB_comp108459_c0_seq1
735bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_KIAA1109_[Bombyx_mori]
GO:0001558 P regulation of cell growth
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0006629 P lipid metabolic process
GO:0007283 P spermatogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019915 P lipid storage
GO:0045444 P fat cell differentiation
GO:0051647 P nucleus localization
GO:0060612 P adipose tissue development
FPKM:4.33 TPM:4.74
5032 A_BomoFB_comp10846_c0_seq1
2740bp
 mitochondrial_aldehyde_dehydrogenase_[Bombyx_mori]
GO:0004029 F aldehyde dehydrogenase (NAD+) activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0016620 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0055114 P obsolete oxidation-reduction process
FPKM:340.59 TPM:373.19
5033 A_BomoFB_comp10847_c0_seq1
1601bp
 phosphoserine_aminotransferase_1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004648 F O-phospho-L-serine:2-oxoglutarate aminotransferase activity
GO:0006564 P L-serine biosynthetic process
GO:0008483 F transaminase activity
GO:0008615 P pyridoxine biosynthetic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0016740 F transferase activity
FPKM:310.36 TPM:340.06
5034 A_BomoFB_comp1084_c0_seq1
222bp
 delta_fatty_acid_desaturase,_partial_[Curtobacterium_flaccumfaciens]
FPKM:2.32 TPM:2.55
5035 A_BomoFB_comp108503_c0_seq1
583bp
FPKM:1.90 TPM:2.08
5036 A_BomoFB_comp1085065_c0_seq1
246bp
 hypothetical_protein_[Spiroplasma_culicicola]
FPKM:0.80 TPM:0.88
5037 A_BomoFB_comp10850_c0_seq1
3570bp
 heat_shock_protein_70-3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0005811 C lipid droplet
GO:0005875 C microtubule associated complex
GO:0009408 P response to heat
GO:0010906 P regulation of glucose metabolic process
GO:0012505 C endomembrane system
GO:0016246 P RNA interference
GO:0016887 F ATP hydrolysis activity
GO:0030431 P sleep
GO:0051298 P centrosome duplication
FPKM:308.09 TPM:337.58
5038 A_BomoFB_comp1085164_c0_seq1
209bp
 PREDICTED:_transmembrane_and_TPR_repeat-containing_protein_1-like_[Bombyx_mori]
FPKM:2.98 TPM:3.27
5039 A_BomoFB_comp10856_c0_seq1
2259bp
 PREDICTED:_phosphoserine_phosphatase_[Amyelois_transitella]
GO:0000287 F magnesium ion binding
GO:0004647 F L-phosphoserine phosphatase activity
GO:0005509 F calcium ion binding
GO:0005737 C cytoplasm
GO:0006563 P L-serine metabolic process
GO:0006564 P L-serine biosynthetic process
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
FPKM:260.84 TPM:285.81
5040 A_BomoFB_comp108586_c0_seq1
449bp
FPKM:1.22 TPM:1.34
previous next from show/35635

- SilkBase 1999-2023 -