SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/35635
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3301 A_BomoFB_comp10508_c1_seq47
5216bp
 PREDICTED:_leupaxin_isoform_X3_[Bombyx_mori]
GO:0001725 C stress fiber
GO:0005515 F protein binding
GO:0005623 C obsolete cell
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007155 P cell adhesion
GO:0007160 P cell-matrix adhesion
GO:0008270 F zinc ion binding
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0035994 P response to muscle stretch
GO:0046872 F metal ion binding
FPKM:2.17 TPM:2.38
3302 A_BomoFB_comp10508_c1_seq5
4347bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:16.85 TPM:18.47
3303 A_BomoFB_comp10508_c1_seq6
5748bp
 PREDICTED:_N-acylneuraminate-9-phosphatase_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0005975 P carbohydrate metabolic process
GO:0006045 P N-acetylglucosamine biosynthetic process
GO:0008152 P metabolic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0046380 P N-acetylneuraminate biosynthetic process
GO:0050124 F N-acylneuraminate-9-phosphatase activity
FPKM:0.00 TPM:0.00
3304 A_BomoFB_comp10508_c1_seq7
3503bp
 PREDICTED:_paxillin_isoform_X2_[Bombyx_mori]
GO:0001725 C stress fiber
GO:0005515 F protein binding
GO:0005623 C obsolete cell
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007155 P cell adhesion
GO:0007160 P cell-matrix adhesion
GO:0008270 F zinc ion binding
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0035994 P response to muscle stretch
GO:0046872 F metal ion binding
FPKM:0.05 TPM:0.05
3305 A_BomoFB_comp10508_c1_seq8
4941bp
 PREDICTED:_leupaxin_isoform_X3_[Bombyx_mori]
GO:0001725 C stress fiber
GO:0005515 F protein binding
GO:0005623 C obsolete cell
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007155 P cell adhesion
GO:0007160 P cell-matrix adhesion
GO:0008270 F zinc ion binding
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0035994 P response to muscle stretch
GO:0046872 F metal ion binding
FPKM:0.05 TPM:0.05
3306 A_BomoFB_comp10508_c1_seq9
5060bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.14 TPM:0.16
3307 A_BomoFB_comp10509_c0_seq1
5428bp
 PREDICTED:_transcriptional_activator_cubitus_interruptus_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001205 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0002385 P mucosal immune response
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007224 P smoothened signaling pathway
GO:0007275 P multicellular organism development
GO:0007346 P regulation of mitotic cell cycle
GO:0007350 P blastoderm segmentation
GO:0007367 P segment polarity determination
GO:0008544 P epidermis development
GO:0016020 C membrane
GO:0030707 P ovarian follicle cell development
GO:0030858 P positive regulation of epithelial cell differentiation
GO:0035017 P cuticle pattern formation
GO:0035217 P labial disc development
GO:0035224 P genital disc anterior/posterior pattern formation
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0035301 C Hedgehog signaling complex
GO:0042803 F protein homodimerization activity
GO:0043234 C protein-containing complex
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048100 P wing disc anterior/posterior pattern formation
GO:0048477 P oogenesis
GO:0048592 P eye morphogenesis
GO:0048666 P neuron development
GO:0048813 P dendrite morphogenesis
GO:0060914 P heart formation
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
FPKM:0.01 TPM:0.01
3308 A_BomoFB_comp10509_c0_seq2
5423bp
 PREDICTED:_transcriptional_activator_cubitus_interruptus_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001205 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0002385 P mucosal immune response
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007224 P smoothened signaling pathway
GO:0007275 P multicellular organism development
GO:0007346 P regulation of mitotic cell cycle
GO:0007350 P blastoderm segmentation
GO:0007367 P segment polarity determination
GO:0008544 P epidermis development
GO:0016020 C membrane
GO:0030707 P ovarian follicle cell development
GO:0030858 P positive regulation of epithelial cell differentiation
GO:0035017 P cuticle pattern formation
GO:0035217 P labial disc development
GO:0035224 P genital disc anterior/posterior pattern formation
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0035301 C Hedgehog signaling complex
GO:0042803 F protein homodimerization activity
GO:0043234 C protein-containing complex
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048100 P wing disc anterior/posterior pattern formation
GO:0048477 P oogenesis
GO:0048592 P eye morphogenesis
GO:0048666 P neuron development
GO:0048813 P dendrite morphogenesis
GO:0060914 P heart formation
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
FPKM:1.05 TPM:1.15
3309 A_BomoFB_comp10509_c0_seq3
5346bp
 PREDICTED:_transcriptional_activator_cubitus_interruptus_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001205 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0002385 P mucosal immune response
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007224 P smoothened signaling pathway
GO:0007275 P multicellular organism development
GO:0007346 P regulation of mitotic cell cycle
GO:0007350 P blastoderm segmentation
GO:0007367 P segment polarity determination
GO:0008544 P epidermis development
GO:0016020 C membrane
GO:0030707 P ovarian follicle cell development
GO:0030858 P positive regulation of epithelial cell differentiation
GO:0035017 P cuticle pattern formation
GO:0035217 P labial disc development
GO:0035224 P genital disc anterior/posterior pattern formation
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0035301 C Hedgehog signaling complex
GO:0042803 F protein homodimerization activity
GO:0043234 C protein-containing complex
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048100 P wing disc anterior/posterior pattern formation
GO:0048477 P oogenesis
GO:0048592 P eye morphogenesis
GO:0048666 P neuron development
GO:0048813 P dendrite morphogenesis
GO:0060914 P heart formation
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
FPKM:0.08 TPM:0.09
3310 A_BomoFB_comp10509_c0_seq4
5341bp
 PREDICTED:_transcriptional_activator_cubitus_interruptus_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001205 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0002385 P mucosal immune response
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007224 P smoothened signaling pathway
GO:0007275 P multicellular organism development
GO:0007346 P regulation of mitotic cell cycle
GO:0007350 P blastoderm segmentation
GO:0007367 P segment polarity determination
GO:0008544 P epidermis development
GO:0016020 C membrane
GO:0030707 P ovarian follicle cell development
GO:0030858 P positive regulation of epithelial cell differentiation
GO:0035017 P cuticle pattern formation
GO:0035217 P labial disc development
GO:0035224 P genital disc anterior/posterior pattern formation
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0035301 C Hedgehog signaling complex
GO:0042803 F protein homodimerization activity
GO:0043234 C protein-containing complex
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048100 P wing disc anterior/posterior pattern formation
GO:0048477 P oogenesis
GO:0048592 P eye morphogenesis
GO:0048666 P neuron development
GO:0048813 P dendrite morphogenesis
GO:0060914 P heart formation
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
FPKM:6.70 TPM:7.35
3311 A_BomoFB_comp1050_c0_seq1
319bp
FPKM:1.63 TPM:1.79
3312 A_BomoFB_comp105107_c0_seq1
681bp
 PREDICTED:_uncharacterized_protein_LOC106129363_[Amyelois_transitella]
FPKM:5.12 TPM:5.61
3313 A_BomoFB_comp10510_c0_seq1
2780bp
 Transposon_Ty3-G_Gag-Pol_polyprotein_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.80 TPM:1.97
3314 A_BomoFB_comp10510_c0_seq2
4971bp
 Transposon_Ty3-G_Gag-Pol_polyprotein_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:9.20 TPM:10.08
3315 A_BomoFB_comp10510_c0_seq3
2055bp
 PREDICTED:_serine_protease_inhibitor_3_isoform_X1_[Bombyx_mori]
GO:0002020 F protease binding
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0004869 F cysteine-type endopeptidase inhibitor activity
GO:0005615 C extracellular space
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0009411 P response to UV
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030162 P regulation of proteolysis
GO:0030414 F peptidase inhibitor activity
GO:0070062 C extracellular exosome
GO:1902173 P negative regulation of keratinocyte apoptotic process
FPKM:27.74 TPM:30.40
3316 A_BomoFB_comp10510_c0_seq4
2486bp
 PREDICTED:_serine_protease_inhibitor_3_isoform_X1_[Bombyx_mori]
GO:0002020 F protease binding
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0004869 F cysteine-type endopeptidase inhibitor activity
GO:0005615 C extracellular space
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0009411 P response to UV
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030162 P regulation of proteolysis
GO:0030414 F peptidase inhibitor activity
GO:0070062 C extracellular exosome
GO:1902173 P negative regulation of keratinocyte apoptotic process
FPKM:2.06 TPM:2.26
3317 A_BomoFB_comp10510_c1_seq1
903bp
 PREDICTED:_uncharacterized_protein_LOC105842376_[Bombyx_mori]
FPKM:2.94 TPM:3.22
3318 A_BomoFB_comp10511_c0_seq1
4462bp
 PREDICTED:_twitchin_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0018107 P peptidyl-threonine phosphorylation
GO:0031672 C A band
GO:0046872 F metal ion binding
GO:0051782 P negative regulation of cell division
FPKM:52.15 TPM:57.14
3319 A_BomoFB_comp10512_c0_seq1
3629bp
 PREDICTED:_lysine-specific_demethylase_lid_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007526 P larval somatic muscle development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016577 P histone demethylation
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0032453 F histone H3-methyl-lysine-4 demethylase activity
GO:0032922 P circadian regulation of gene expression
GO:0034647 F histone H3-tri/di/monomethyl-lysine-4 demethylase activity
GO:0034720 P histone H3-K4 demethylation
GO:0034721 P histone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0043970 P histone H3-K9 acetylation
GO:0043992 F histone acetyltransferase activity (H3-K9 specific)
GO:0045475 P locomotor rhythm
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048511 P rhythmic process
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070822 C Sin3-type complex
FPKM:0.74 TPM:0.81
3320 A_BomoFB_comp10512_c0_seq2
3696bp
 PREDICTED:_lysine-specific_demethylase_lid_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006325 P chromatin organization
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007526 P larval somatic muscle development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016577 P histone demethylation
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0032453 F histone H3-methyl-lysine-4 demethylase activity
GO:0032922 P circadian regulation of gene expression
GO:0034647 F histone H3-tri/di/monomethyl-lysine-4 demethylase activity
GO:0034720 P histone H3-K4 demethylation
GO:0034721 P histone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0043970 P histone H3-K9 acetylation
GO:0043992 F histone acetyltransferase activity (H3-K9 specific)
GO:0045475 P locomotor rhythm
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048511 P rhythmic process
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070822 C Sin3-type complex
FPKM:7.36 TPM:8.06
3321 A_BomoFB_comp10512_c0_seq3
862bp
 PREDICTED:_lysine-specific_demethylase_lid_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0008270 F zinc ion binding
GO:0008584 P male gonad development
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0019907 C cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0031490 F chromatin DNA binding
GO:0032452 F histone demethylase activity
GO:0032922 P circadian regulation of gene expression
GO:0032993 C protein-DNA complex
GO:0034720 P histone H3-K4 demethylation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048511 P rhythmic process
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:1901726 P negative regulation of histone deacetylase activity
FPKM:4.40 TPM:4.82
3322 A_BomoFB_comp10513_c0_seq1
1336bp
 PREDICTED:_uncharacterized_protein_LOC105841327_[Bombyx_mori]
FPKM:3.11 TPM:3.41
3323 A_BomoFB_comp10513_c0_seq2
536bp
FPKM:3.02 TPM:3.30
3324 A_BomoFB_comp10513_c0_seq3
1253bp
 PREDICTED:_uncharacterized_protein_LOC105841327_[Bombyx_mori]
FPKM:2.40 TPM:2.63
3325 A_BomoFB_comp10513_c0_seq4
216bp
FPKM:0.00 TPM:0.00
3326 A_BomoFB_comp10513_c0_seq5
670bp
FPKM:1.48 TPM:1.62
3327 A_BomoFB_comp10513_c0_seq6
219bp
FPKM:1.23 TPM:1.34
3328 A_BomoFB_comp10513_c0_seq7
496bp
 hypothetical_protein_SINV_08655,_partial_[Solenopsis_invicta]
FPKM:1.43 TPM:1.57
3329 A_BomoFB_comp10513_c0_seq8
1415bp
 PREDICTED:_uncharacterized_protein_LOC105841327_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3330 A_BomoFB_comp10513_c0_seq9
1332bp
 PREDICTED:_uncharacterized_protein_LOC105841327_[Bombyx_mori]
FPKM:3.52 TPM:3.86
previous next from show/35635

- SilkBase 1999-2023 -