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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1591 A_BomoFB_comp10352_c0_seq1
4073bp
 PREDICTED:_nesprin-1-like_isoform_X3_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006997 P nucleus organization
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
FPKM:59.83 TPM:65.56
1592 A_BomoFB_comp10352_c0_seq2
11828bp
 PREDICTED:_nesprin-1-like_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006997 P nucleus organization
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
FPKM:6.33 TPM:6.94
1593 A_BomoFB_comp10352_c0_seq3
4034bp
 PREDICTED:_nesprin-1-like_isoform_X2_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006997 P nucleus organization
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
FPKM:1.43 TPM:1.57
1594 A_BomoFB_comp10352_c0_seq4
11867bp
 PREDICTED:_nesprin-1-like_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006997 P nucleus organization
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
FPKM:23.06 TPM:25.27
1595 A_BomoFB_comp10353_c0_seq1
434bp
FPKM:6.27 TPM:6.87
1596 A_BomoFB_comp10353_c1_seq1
6444bp
 PREDICTED:_uncharacterized_protein_LOC101737406_isoform_X1_[Bombyx_mori]
FPKM:6.44 TPM:7.06
1597 A_BomoFB_comp10353_c1_seq2
2663bp
 PREDICTED:_uncharacterized_protein_LOC101737406_isoform_X1_[Bombyx_mori]
FPKM:1.14 TPM:1.25
1598 A_BomoFB_comp10354_c0_seq1
17969bp
 PREDICTED:_nesprin-1-like_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
FPKM:0.39 TPM:0.43
1599 A_BomoFB_comp10354_c0_seq2
1727bp
 PREDICTED:_nesprin-1-like_[Bombyx_mori]
FPKM:7.54 TPM:8.26
1600 A_BomoFB_comp10354_c0_seq3
17867bp
 PREDICTED:_nesprin-1-like_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
FPKM:2.22 TPM:2.43
1601 A_BomoFB_comp10354_c0_seq4
15448bp
 PREDICTED:_nesprin-1-like_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
FPKM:9.02 TPM:9.88
1602 A_BomoFB_comp10354_c0_seq5
4146bp
 PREDICTED:_nesprin-1-like_[Bombyx_mori]
FPKM:6.32 TPM:6.93
1603 A_BomoFB_comp10354_c0_seq6
15550bp
 PREDICTED:_nesprin-1-like_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
FPKM:1.20 TPM:1.32
1604 A_BomoFB_comp10355_c0_seq1
1396bp
 signal_sequence_receptor_precursor_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:174.13 TPM:190.80
1605 A_BomoFB_comp10356_c0_seq1
427bp
FPKM:0.70 TPM:0.76
1606 A_BomoFB_comp10356_c0_seq2
443bp
FPKM:0.00 TPM:0.00
1607 A_BomoFB_comp10356_c0_seq3
974bp
FPKM:2.06 TPM:2.26
1608 A_BomoFB_comp10356_c0_seq4
958bp
FPKM:1.25 TPM:1.37
1609 A_BomoFB_comp10357_c0_seq1
452bp
 PREDICTED:_uncharacterized_protein_LOC101744731,_partial_[Bombyx_mori]
FPKM:1.61 TPM:1.77
1610 A_BomoFB_comp10357_c0_seq2
260bp
 PREDICTED:_uncharacterized_protein_LOC101744731,_partial_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1611 A_BomoFB_comp10357_c0_seq3
455bp
 PREDICTED:_uncharacterized_protein_LOC101744731,_partial_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1612 A_BomoFB_comp10357_c0_seq4
325bp
 PREDICTED:_uncharacterized_protein_LOC101744731,_partial_[Bombyx_mori]
FPKM:1.90 TPM:2.08
1613 A_BomoFB_comp10357_c0_seq5
391bp
 PREDICTED:_uncharacterized_protein_LOC101744731,_partial_[Bombyx_mori]
FPKM:2.87 TPM:3.14
1614 A_BomoFB_comp10358_c0_seq1
776bp
FPKM:3.57 TPM:3.91
1615 A_BomoFB_comp10358_c1_seq1
1649bp
FPKM:11.45 TPM:12.54
1616 A_BomoFB_comp10358_c2_seq1
323bp
 PREDICTED:_zinc_finger_protein_718-like_isoform_X2_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1617 A_BomoFB_comp10358_c2_seq10
1496bp
 hypothetical_protein_T10_5095_[Trichinella_papuae]
FPKM:0.00 TPM:0.00
1618 A_BomoFB_comp10358_c2_seq11
481bp
 MarR_family_transcriptional_regulator_[Mangrovimonas_yunxiaonensis]
FPKM:0.00 TPM:0.00
1619 A_BomoFB_comp10358_c2_seq12
774bp
 hypothetical_protein_U473_13940_[Tepidibacillus_sp._Z9]
FPKM:0.00 TPM:0.00
1620 A_BomoFB_comp10358_c2_seq13
807bp
FPKM:1.05 TPM:1.15
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